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CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer
The function played by cartilage intermediate layer protein 2 (CILP2) between colorectal cancer (CRC) progression and immune response remains unclear, especially with respect to immune cell infiltration and checkpoints. Materials and Methods: We examined CILP2 expression in The Cancer Genome Atlas (...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151353/ https://www.ncbi.nlm.nih.gov/pubmed/37144183 http://dx.doi.org/10.1016/j.heliyon.2023.e15535 |
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author | Wang, Xueli Zhang, Yu Song, Niping Li, Kaiqiang Lei, Siyun Wang, Jianwei Wang, Zhen Zhang, Wei |
author_facet | Wang, Xueli Zhang, Yu Song, Niping Li, Kaiqiang Lei, Siyun Wang, Jianwei Wang, Zhen Zhang, Wei |
author_sort | Wang, Xueli |
collection | PubMed |
description | The function played by cartilage intermediate layer protein 2 (CILP2) between colorectal cancer (CRC) progression and immune response remains unclear, especially with respect to immune cell infiltration and checkpoints. Materials and Methods: We examined CILP2 expression in The Cancer Genome Atlas (TCGA) COAD-READ cohort and analyzed its relationship with clinicopathological features, mutations, survival, and immunity. Gene ontology, Kyoto Encyclopedia of Genes and Genomes pathway analysis, and gene set enrichment analyses (GSEA) were performed to determine CILP2 related pathways. To further investigate the results of TCGA analysis, validation was performed using CRC cell lines, fresh pathological tissues, and a CRC tissue microarray (TMA). Results: In both TCGA and TMA cohorts, CILP2 expression was increased in CRC tissues and was associated with patient T stage (T3 and T4), N stage (N1), pathological stage (III and IV), and overall survival. Immune cell infiltration and checkpoint analysis revealed that CILP2 expression is highly correlated with multiple immune marker genes, including PD-1. In addition, results of enrichment analysis indicated that CILP2 related genes was mainly enriched in extracellular matrix related functions. Conclusion: Elevated CILP2 expression is associated with adverse CRC clinical features and immune cells, it has potential as a biomarker detrimental to CRC survival. |
format | Online Article Text |
id | pubmed-10151353 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-101513532023-05-03 CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer Wang, Xueli Zhang, Yu Song, Niping Li, Kaiqiang Lei, Siyun Wang, Jianwei Wang, Zhen Zhang, Wei Heliyon Research Article The function played by cartilage intermediate layer protein 2 (CILP2) between colorectal cancer (CRC) progression and immune response remains unclear, especially with respect to immune cell infiltration and checkpoints. Materials and Methods: We examined CILP2 expression in The Cancer Genome Atlas (TCGA) COAD-READ cohort and analyzed its relationship with clinicopathological features, mutations, survival, and immunity. Gene ontology, Kyoto Encyclopedia of Genes and Genomes pathway analysis, and gene set enrichment analyses (GSEA) were performed to determine CILP2 related pathways. To further investigate the results of TCGA analysis, validation was performed using CRC cell lines, fresh pathological tissues, and a CRC tissue microarray (TMA). Results: In both TCGA and TMA cohorts, CILP2 expression was increased in CRC tissues and was associated with patient T stage (T3 and T4), N stage (N1), pathological stage (III and IV), and overall survival. Immune cell infiltration and checkpoint analysis revealed that CILP2 expression is highly correlated with multiple immune marker genes, including PD-1. In addition, results of enrichment analysis indicated that CILP2 related genes was mainly enriched in extracellular matrix related functions. Conclusion: Elevated CILP2 expression is associated with adverse CRC clinical features and immune cells, it has potential as a biomarker detrimental to CRC survival. Elsevier 2023-04-20 /pmc/articles/PMC10151353/ /pubmed/37144183 http://dx.doi.org/10.1016/j.heliyon.2023.e15535 Text en © 2023 Published by Elsevier Ltd. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Wang, Xueli Zhang, Yu Song, Niping Li, Kaiqiang Lei, Siyun Wang, Jianwei Wang, Zhen Zhang, Wei CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title | CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title_full | CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title_fullStr | CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title_full_unstemmed | CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title_short | CILP2: A prognostic biomarker associated with immune infiltration in colorectal cancer |
title_sort | cilp2: a prognostic biomarker associated with immune infiltration in colorectal cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151353/ https://www.ncbi.nlm.nih.gov/pubmed/37144183 http://dx.doi.org/10.1016/j.heliyon.2023.e15535 |
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