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LDRGDb - Legumes disease resistance genes database

Legumes comprise one of the world’s largest, most diverse, and economically important plant families, known for their nutritional and medicinal benefits. Legumes are susceptible to a wide range of diseases, similar to other agricultural crops. Diseases have a considerable impact on the production of...

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Autores principales: Saxena, Harshita, Kulshreshtha, Aishani, Agarwal, Avinav, Kumar, Anuj, Singh, Nisha, Jain, Chakresh Kumar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151526/
https://www.ncbi.nlm.nih.gov/pubmed/37143876
http://dx.doi.org/10.3389/fpls.2023.1143111
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author Saxena, Harshita
Kulshreshtha, Aishani
Agarwal, Avinav
Kumar, Anuj
Singh, Nisha
Jain, Chakresh Kumar
author_facet Saxena, Harshita
Kulshreshtha, Aishani
Agarwal, Avinav
Kumar, Anuj
Singh, Nisha
Jain, Chakresh Kumar
author_sort Saxena, Harshita
collection PubMed
description Legumes comprise one of the world’s largest, most diverse, and economically important plant families, known for their nutritional and medicinal benefits. Legumes are susceptible to a wide range of diseases, similar to other agricultural crops. Diseases have a considerable impact on the production of legume crop species, resulting in large yield losses worldwide. Due to continuous interactions between plants and their pathogens in the environment and the evolution of new pathogens under high selection pressure; disease resistant genes emerge in plant cultivars in the field against those pathogens or disease. Thus, disease resistant genes play critical roles in plant resistance responses, and their discovery and subsequent use in breeding programmes aid in reducing yield loss. The genomic era, with its high-throughput and low-cost genomic tools, has revolutionised our understanding of the complex interactions between legumes and pathogens, resulting in the identification of several critical participants in both the resistant and susceptible relationships. However, a substantial amount of existing information about numerous legume species has been disseminated as text or is preserved across fractions in different databases, posing a challenge for researchers. As a result, the range, scope, and complexity of these resources pose challenges to those who manage and use them. Therefore, there is an urgent need to develop tools and a single conjugate database to manage genetic information for the world’s plant genetic resources, allowing for the rapid incorporation of essential resistance genes into breeding strategies. Here, developed the first comprehensive database of disease resistance genes named as LDRGDb - LEGUMES DISEASE RESISTANCE GENES DATABASE comprises 10 legumes [Pigeon pea (Cajanus cajan), Chickpea (Cicer arietinum), Soybean (Glycine max), Lentil (Lens culinaris), Alfalfa (Medicago sativa), Barrelclover (Medicago truncatula), Common bean (Phaseolus vulgaris), Pea (Pisum sativum),Faba bean (Vicia faba), and Cowpea (Vigna unguiculata)]. The LDRGDb is a user-friendly database developed by integrating a variety of tools and software that combine knowledge about resistant genes, QTLs, and their loci, with proteomics, pathway interactions, and genomics (https://ldrgdb.in/).
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spelling pubmed-101515262023-05-03 LDRGDb - Legumes disease resistance genes database Saxena, Harshita Kulshreshtha, Aishani Agarwal, Avinav Kumar, Anuj Singh, Nisha Jain, Chakresh Kumar Front Plant Sci Plant Science Legumes comprise one of the world’s largest, most diverse, and economically important plant families, known for their nutritional and medicinal benefits. Legumes are susceptible to a wide range of diseases, similar to other agricultural crops. Diseases have a considerable impact on the production of legume crop species, resulting in large yield losses worldwide. Due to continuous interactions between plants and their pathogens in the environment and the evolution of new pathogens under high selection pressure; disease resistant genes emerge in plant cultivars in the field against those pathogens or disease. Thus, disease resistant genes play critical roles in plant resistance responses, and their discovery and subsequent use in breeding programmes aid in reducing yield loss. The genomic era, with its high-throughput and low-cost genomic tools, has revolutionised our understanding of the complex interactions between legumes and pathogens, resulting in the identification of several critical participants in both the resistant and susceptible relationships. However, a substantial amount of existing information about numerous legume species has been disseminated as text or is preserved across fractions in different databases, posing a challenge for researchers. As a result, the range, scope, and complexity of these resources pose challenges to those who manage and use them. Therefore, there is an urgent need to develop tools and a single conjugate database to manage genetic information for the world’s plant genetic resources, allowing for the rapid incorporation of essential resistance genes into breeding strategies. Here, developed the first comprehensive database of disease resistance genes named as LDRGDb - LEGUMES DISEASE RESISTANCE GENES DATABASE comprises 10 legumes [Pigeon pea (Cajanus cajan), Chickpea (Cicer arietinum), Soybean (Glycine max), Lentil (Lens culinaris), Alfalfa (Medicago sativa), Barrelclover (Medicago truncatula), Common bean (Phaseolus vulgaris), Pea (Pisum sativum),Faba bean (Vicia faba), and Cowpea (Vigna unguiculata)]. The LDRGDb is a user-friendly database developed by integrating a variety of tools and software that combine knowledge about resistant genes, QTLs, and their loci, with proteomics, pathway interactions, and genomics (https://ldrgdb.in/). Frontiers Media S.A. 2023-04-18 /pmc/articles/PMC10151526/ /pubmed/37143876 http://dx.doi.org/10.3389/fpls.2023.1143111 Text en Copyright © 2023 Saxena, Kulshreshtha, Agarwal, Kumar, Singh and Jain https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Saxena, Harshita
Kulshreshtha, Aishani
Agarwal, Avinav
Kumar, Anuj
Singh, Nisha
Jain, Chakresh Kumar
LDRGDb - Legumes disease resistance genes database
title LDRGDb - Legumes disease resistance genes database
title_full LDRGDb - Legumes disease resistance genes database
title_fullStr LDRGDb - Legumes disease resistance genes database
title_full_unstemmed LDRGDb - Legumes disease resistance genes database
title_short LDRGDb - Legumes disease resistance genes database
title_sort ldrgdb - legumes disease resistance genes database
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151526/
https://www.ncbi.nlm.nih.gov/pubmed/37143876
http://dx.doi.org/10.3389/fpls.2023.1143111
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