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Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data

Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standa...

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Autores principales: M. Mehr, S. Hessam, Caramelli, Dario, Cronin, Leroy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151610/
https://www.ncbi.nlm.nih.gov/pubmed/37068251
http://dx.doi.org/10.1073/pnas.2220045120
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author M. Mehr, S. Hessam
Caramelli, Dario
Cronin, Leroy
author_facet M. Mehr, S. Hessam
Caramelli, Dario
Cronin, Leroy
author_sort M. Mehr, S. Hessam
collection PubMed
description Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standardize the discovery process and accelerate the interpretation of high-dimensional data aided by the expert chemist’s intuition. We demonstrate a digital Oracle that interprets chemical reactivity using probability. By carrying out >500 reactions covering a large space and retaining both the positive and negative results, the Oracle was able to rediscover eight historically important reactions including the aldol condensation, Buchwald–Hartwig amination, Heck, Mannich, Sonogashira, Suzuki, Wittig, and Wittig–Horner reactions. This paradigm for decoding reactivity validates and formalizes the expert chemist’s experience and intuition, providing a quantitative criterion of discovery scalable to all available experimental data.
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spelling pubmed-101516102023-05-03 Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data M. Mehr, S. Hessam Caramelli, Dario Cronin, Leroy Proc Natl Acad Sci U S A Physical Sciences Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standardize the discovery process and accelerate the interpretation of high-dimensional data aided by the expert chemist’s intuition. We demonstrate a digital Oracle that interprets chemical reactivity using probability. By carrying out >500 reactions covering a large space and retaining both the positive and negative results, the Oracle was able to rediscover eight historically important reactions including the aldol condensation, Buchwald–Hartwig amination, Heck, Mannich, Sonogashira, Suzuki, Wittig, and Wittig–Horner reactions. This paradigm for decoding reactivity validates and formalizes the expert chemist’s experience and intuition, providing a quantitative criterion of discovery scalable to all available experimental data. National Academy of Sciences 2023-04-17 2023-04-25 /pmc/articles/PMC10151610/ /pubmed/37068251 http://dx.doi.org/10.1073/pnas.2220045120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Physical Sciences
M. Mehr, S. Hessam
Caramelli, Dario
Cronin, Leroy
Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title_full Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title_fullStr Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title_full_unstemmed Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title_short Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
title_sort digitizing chemical discovery with a bayesian explorer for interpreting reactivity data
topic Physical Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151610/
https://www.ncbi.nlm.nih.gov/pubmed/37068251
http://dx.doi.org/10.1073/pnas.2220045120
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