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Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data
Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standa...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151610/ https://www.ncbi.nlm.nih.gov/pubmed/37068251 http://dx.doi.org/10.1073/pnas.2220045120 |
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author | M. Mehr, S. Hessam Caramelli, Dario Cronin, Leroy |
author_facet | M. Mehr, S. Hessam Caramelli, Dario Cronin, Leroy |
author_sort | M. Mehr, S. Hessam |
collection | PubMed |
description | Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standardize the discovery process and accelerate the interpretation of high-dimensional data aided by the expert chemist’s intuition. We demonstrate a digital Oracle that interprets chemical reactivity using probability. By carrying out >500 reactions covering a large space and retaining both the positive and negative results, the Oracle was able to rediscover eight historically important reactions including the aldol condensation, Buchwald–Hartwig amination, Heck, Mannich, Sonogashira, Suzuki, Wittig, and Wittig–Horner reactions. This paradigm for decoding reactivity validates and formalizes the expert chemist’s experience and intuition, providing a quantitative criterion of discovery scalable to all available experimental data. |
format | Online Article Text |
id | pubmed-10151610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-101516102023-05-03 Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data M. Mehr, S. Hessam Caramelli, Dario Cronin, Leroy Proc Natl Acad Sci U S A Physical Sciences Interpreting the outcome of chemistry experiments consistently is slow and frequently introduces unwanted hidden bias. This difficulty limits the scale of collectable data and often leads to exclusion of negative results, which severely limits progress in the field. What is needed is a way to standardize the discovery process and accelerate the interpretation of high-dimensional data aided by the expert chemist’s intuition. We demonstrate a digital Oracle that interprets chemical reactivity using probability. By carrying out >500 reactions covering a large space and retaining both the positive and negative results, the Oracle was able to rediscover eight historically important reactions including the aldol condensation, Buchwald–Hartwig amination, Heck, Mannich, Sonogashira, Suzuki, Wittig, and Wittig–Horner reactions. This paradigm for decoding reactivity validates and formalizes the expert chemist’s experience and intuition, providing a quantitative criterion of discovery scalable to all available experimental data. National Academy of Sciences 2023-04-17 2023-04-25 /pmc/articles/PMC10151610/ /pubmed/37068251 http://dx.doi.org/10.1073/pnas.2220045120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Physical Sciences M. Mehr, S. Hessam Caramelli, Dario Cronin, Leroy Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title | Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title_full | Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title_fullStr | Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title_full_unstemmed | Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title_short | Digitizing chemical discovery with a Bayesian explorer for interpreting reactivity data |
title_sort | digitizing chemical discovery with a bayesian explorer for interpreting reactivity data |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10151610/ https://www.ncbi.nlm.nih.gov/pubmed/37068251 http://dx.doi.org/10.1073/pnas.2220045120 |
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