Cargando…

ATP-induced crosslinking of a biomolecular condensate

DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic...

Descripción completa

Detalles Bibliográficos
Autores principales: Coupe, Sebastian, Fakhri, Nikta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10153144/
https://www.ncbi.nlm.nih.gov/pubmed/37131735
http://dx.doi.org/10.1101/2023.04.18.535486
_version_ 1785035878504071168
author Coupe, Sebastian
Fakhri, Nikta
author_facet Coupe, Sebastian
Fakhri, Nikta
author_sort Coupe, Sebastian
collection PubMed
description DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic core alters ribonucleoprotein condensate dynamics in the presence of ATP. Through altering RNA length within the system, we are able to attribute the altered biomolecular dynamics and material properties to physical crosslinking of RNA facilitated by the mutant helicase. These results suggest the mutant condensates approach a gel transition when RNA length is increased to lengths comparable to eukaryotic mRNA. Lastly, we show that this crosslinking effect is tunable with ATP concentration, uncovering a system whose RNA mobility and material properties vary with enzyme activity. More generally, these findings point to a fundamental mechanism for modulating condensate dynamics and emergent material properties through nonequilibrium, molecular-scale interactions.
format Online
Article
Text
id pubmed-10153144
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Cold Spring Harbor Laboratory
record_format MEDLINE/PubMed
spelling pubmed-101531442023-05-03 ATP-induced crosslinking of a biomolecular condensate Coupe, Sebastian Fakhri, Nikta bioRxiv Article DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic core alters ribonucleoprotein condensate dynamics in the presence of ATP. Through altering RNA length within the system, we are able to attribute the altered biomolecular dynamics and material properties to physical crosslinking of RNA facilitated by the mutant helicase. These results suggest the mutant condensates approach a gel transition when RNA length is increased to lengths comparable to eukaryotic mRNA. Lastly, we show that this crosslinking effect is tunable with ATP concentration, uncovering a system whose RNA mobility and material properties vary with enzyme activity. More generally, these findings point to a fundamental mechanism for modulating condensate dynamics and emergent material properties through nonequilibrium, molecular-scale interactions. Cold Spring Harbor Laboratory 2023-04-18 /pmc/articles/PMC10153144/ /pubmed/37131735 http://dx.doi.org/10.1101/2023.04.18.535486 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use.
spellingShingle Article
Coupe, Sebastian
Fakhri, Nikta
ATP-induced crosslinking of a biomolecular condensate
title ATP-induced crosslinking of a biomolecular condensate
title_full ATP-induced crosslinking of a biomolecular condensate
title_fullStr ATP-induced crosslinking of a biomolecular condensate
title_full_unstemmed ATP-induced crosslinking of a biomolecular condensate
title_short ATP-induced crosslinking of a biomolecular condensate
title_sort atp-induced crosslinking of a biomolecular condensate
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10153144/
https://www.ncbi.nlm.nih.gov/pubmed/37131735
http://dx.doi.org/10.1101/2023.04.18.535486
work_keys_str_mv AT coupesebastian atpinducedcrosslinkingofabiomolecularcondensate
AT fakhrinikta atpinducedcrosslinkingofabiomolecularcondensate