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ATP-induced crosslinking of a biomolecular condensate
DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10153144/ https://www.ncbi.nlm.nih.gov/pubmed/37131735 http://dx.doi.org/10.1101/2023.04.18.535486 |
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author | Coupe, Sebastian Fakhri, Nikta |
author_facet | Coupe, Sebastian Fakhri, Nikta |
author_sort | Coupe, Sebastian |
collection | PubMed |
description | DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic core alters ribonucleoprotein condensate dynamics in the presence of ATP. Through altering RNA length within the system, we are able to attribute the altered biomolecular dynamics and material properties to physical crosslinking of RNA facilitated by the mutant helicase. These results suggest the mutant condensates approach a gel transition when RNA length is increased to lengths comparable to eukaryotic mRNA. Lastly, we show that this crosslinking effect is tunable with ATP concentration, uncovering a system whose RNA mobility and material properties vary with enzyme activity. More generally, these findings point to a fundamental mechanism for modulating condensate dynamics and emergent material properties through nonequilibrium, molecular-scale interactions. |
format | Online Article Text |
id | pubmed-10153144 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-101531442023-05-03 ATP-induced crosslinking of a biomolecular condensate Coupe, Sebastian Fakhri, Nikta bioRxiv Article DEAD-box helicases are important regulators of biomolecular condensates. However, the mechanisms through which these enzymes affect the dynamics of biomolecular condensates have not been systematically explored. Here, we demonstrate the mechanism by which mutation of a DEAD-box helicase’s catalytic core alters ribonucleoprotein condensate dynamics in the presence of ATP. Through altering RNA length within the system, we are able to attribute the altered biomolecular dynamics and material properties to physical crosslinking of RNA facilitated by the mutant helicase. These results suggest the mutant condensates approach a gel transition when RNA length is increased to lengths comparable to eukaryotic mRNA. Lastly, we show that this crosslinking effect is tunable with ATP concentration, uncovering a system whose RNA mobility and material properties vary with enzyme activity. More generally, these findings point to a fundamental mechanism for modulating condensate dynamics and emergent material properties through nonequilibrium, molecular-scale interactions. Cold Spring Harbor Laboratory 2023-04-18 /pmc/articles/PMC10153144/ /pubmed/37131735 http://dx.doi.org/10.1101/2023.04.18.535486 Text en https://creativecommons.org/licenses/by-nd/4.0/This work is licensed under a Creative Commons Attribution-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, and only so long as attribution is given to the creator. The license allows for commercial use. |
spellingShingle | Article Coupe, Sebastian Fakhri, Nikta ATP-induced crosslinking of a biomolecular condensate |
title | ATP-induced crosslinking of a biomolecular condensate |
title_full | ATP-induced crosslinking of a biomolecular condensate |
title_fullStr | ATP-induced crosslinking of a biomolecular condensate |
title_full_unstemmed | ATP-induced crosslinking of a biomolecular condensate |
title_short | ATP-induced crosslinking of a biomolecular condensate |
title_sort | atp-induced crosslinking of a biomolecular condensate |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10153144/ https://www.ncbi.nlm.nih.gov/pubmed/37131735 http://dx.doi.org/10.1101/2023.04.18.535486 |
work_keys_str_mv | AT coupesebastian atpinducedcrosslinkingofabiomolecularcondensate AT fakhrinikta atpinducedcrosslinkingofabiomolecularcondensate |