Cargando…

Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans

BACKGROUND: Buruli ulcer (BU) is a neglected tropical disease caused by infection of subcutaneous tissue with Mycobacterium ulcerans. BU is commonly reported across rural regions of Central and West Africa but has been increasing dramatically in temperate southeast Australia around the major metropo...

Descripción completa

Detalles Bibliográficos
Autores principales: Vandelannoote, Koen, Buultjens, Andrew H, Porter, Jessica L, Velink, Anita, Wallace, John R, Blasdell, Kim R, Dunn, Michael, Boyd, Victoria, Fyfe, Janet AM, Tay, Ee Laine, Johnson, Paul DR, Windecker, Saras M, Golding, Nick, Stinear, Timothy P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154024/
https://www.ncbi.nlm.nih.gov/pubmed/37057888
http://dx.doi.org/10.7554/eLife.84983
_version_ 1785036045153206272
author Vandelannoote, Koen
Buultjens, Andrew H
Porter, Jessica L
Velink, Anita
Wallace, John R
Blasdell, Kim R
Dunn, Michael
Boyd, Victoria
Fyfe, Janet AM
Tay, Ee Laine
Johnson, Paul DR
Windecker, Saras M
Golding, Nick
Stinear, Timothy P
author_facet Vandelannoote, Koen
Buultjens, Andrew H
Porter, Jessica L
Velink, Anita
Wallace, John R
Blasdell, Kim R
Dunn, Michael
Boyd, Victoria
Fyfe, Janet AM
Tay, Ee Laine
Johnson, Paul DR
Windecker, Saras M
Golding, Nick
Stinear, Timothy P
author_sort Vandelannoote, Koen
collection PubMed
description BACKGROUND: Buruli ulcer (BU) is a neglected tropical disease caused by infection of subcutaneous tissue with Mycobacterium ulcerans. BU is commonly reported across rural regions of Central and West Africa but has been increasing dramatically in temperate southeast Australia around the major metropolitan city of Melbourne, with most disease transmission occurring in the summer months. Previous research has shown that Australian native possums are reservoirs of M. ulcerans and that they shed the bacteria in their fecal material (excreta). Field surveys show that locales where possums harbor M. ulcerans overlap with human cases of BU, raising the possibility of using possum excreta surveys to predict the risk of disease occurrence in humans. METHODS: We thus established a highly structured 12 month possum excreta surveillance program across an area of 350 km(2) in the Mornington Peninsula area 70 km south of Melbourne, Australia. The primary objective of our study was to assess using statistical modeling if M. ulcerans surveillance of possum excreta provided useful information for predicting future human BU case locations. RESULTS: Over two sampling campaigns in summer and winter, we collected 2,282 possum excreta specimens of which 11% were PCR positive for M. ulcerans-specific DNA. Using the spatial scanning statistical tool SaTScan, we observed non-random, co-correlated clustering of both M. ulcerans positive possum excreta and human BU cases. We next trained a statistical model with the Mornington Peninsula excreta survey data to predict the future likelihood of human BU cases occurring in the region. By observing where human BU cases subsequently occurred, we show that the excreta model performance was superior to a null model trained using the previous year’s human BU case incidence data (AUC 0.66 vs 0.55). We then used data unseen by the excreta-informed model from a new survey of 661 possum excreta specimens in Geelong, a geographically separate BU endemic area to the southwest of Melbourne, to prospectively predict the location of human BU cases in that region. As for the Mornington Peninsula, the excreta-based BU prediction model outperformed the null model (AUC 0.75 vs 0.50) and pinpointed specific locations in Geelong where interventions could be deployed to interrupt disease spread. CONCLUSIONS: This study highlights the One Health nature of BU by confirming a quantitative relationship between possum excreta shedding of M. ulcerans and humans developing BU. The excreta survey-informed modeling we have described will be a powerful tool for the efficient targeting of public health responses to stop BU. FUNDING: This research was supported by the National Health and Medical Research Council of Australia and the Victorian Government Department of Health (GNT1152807 and GNT1196396).
format Online
Article
Text
id pubmed-10154024
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher eLife Sciences Publications, Ltd
record_format MEDLINE/PubMed
spelling pubmed-101540242023-05-03 Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans Vandelannoote, Koen Buultjens, Andrew H Porter, Jessica L Velink, Anita Wallace, John R Blasdell, Kim R Dunn, Michael Boyd, Victoria Fyfe, Janet AM Tay, Ee Laine Johnson, Paul DR Windecker, Saras M Golding, Nick Stinear, Timothy P eLife Epidemiology and Global Health BACKGROUND: Buruli ulcer (BU) is a neglected tropical disease caused by infection of subcutaneous tissue with Mycobacterium ulcerans. BU is commonly reported across rural regions of Central and West Africa but has been increasing dramatically in temperate southeast Australia around the major metropolitan city of Melbourne, with most disease transmission occurring in the summer months. Previous research has shown that Australian native possums are reservoirs of M. ulcerans and that they shed the bacteria in their fecal material (excreta). Field surveys show that locales where possums harbor M. ulcerans overlap with human cases of BU, raising the possibility of using possum excreta surveys to predict the risk of disease occurrence in humans. METHODS: We thus established a highly structured 12 month possum excreta surveillance program across an area of 350 km(2) in the Mornington Peninsula area 70 km south of Melbourne, Australia. The primary objective of our study was to assess using statistical modeling if M. ulcerans surveillance of possum excreta provided useful information for predicting future human BU case locations. RESULTS: Over two sampling campaigns in summer and winter, we collected 2,282 possum excreta specimens of which 11% were PCR positive for M. ulcerans-specific DNA. Using the spatial scanning statistical tool SaTScan, we observed non-random, co-correlated clustering of both M. ulcerans positive possum excreta and human BU cases. We next trained a statistical model with the Mornington Peninsula excreta survey data to predict the future likelihood of human BU cases occurring in the region. By observing where human BU cases subsequently occurred, we show that the excreta model performance was superior to a null model trained using the previous year’s human BU case incidence data (AUC 0.66 vs 0.55). We then used data unseen by the excreta-informed model from a new survey of 661 possum excreta specimens in Geelong, a geographically separate BU endemic area to the southwest of Melbourne, to prospectively predict the location of human BU cases in that region. As for the Mornington Peninsula, the excreta-based BU prediction model outperformed the null model (AUC 0.75 vs 0.50) and pinpointed specific locations in Geelong where interventions could be deployed to interrupt disease spread. CONCLUSIONS: This study highlights the One Health nature of BU by confirming a quantitative relationship between possum excreta shedding of M. ulcerans and humans developing BU. The excreta survey-informed modeling we have described will be a powerful tool for the efficient targeting of public health responses to stop BU. FUNDING: This research was supported by the National Health and Medical Research Council of Australia and the Victorian Government Department of Health (GNT1152807 and GNT1196396). eLife Sciences Publications, Ltd 2023-04-14 /pmc/articles/PMC10154024/ /pubmed/37057888 http://dx.doi.org/10.7554/eLife.84983 Text en © 2023, Vandelannoote, Buultjens et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Epidemiology and Global Health
Vandelannoote, Koen
Buultjens, Andrew H
Porter, Jessica L
Velink, Anita
Wallace, John R
Blasdell, Kim R
Dunn, Michael
Boyd, Victoria
Fyfe, Janet AM
Tay, Ee Laine
Johnson, Paul DR
Windecker, Saras M
Golding, Nick
Stinear, Timothy P
Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title_full Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title_fullStr Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title_full_unstemmed Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title_short Statistical modeling based on structured surveys of Australian native possum excreta harboring Mycobacterium ulcerans predicts Buruli ulcer occurrence in humans
title_sort statistical modeling based on structured surveys of australian native possum excreta harboring mycobacterium ulcerans predicts buruli ulcer occurrence in humans
topic Epidemiology and Global Health
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10154024/
https://www.ncbi.nlm.nih.gov/pubmed/37057888
http://dx.doi.org/10.7554/eLife.84983
work_keys_str_mv AT vandelannootekoen statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT buultjensandrewh statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT porterjessical statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT velinkanita statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT wallacejohnr statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT blasdellkimr statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT dunnmichael statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT boydvictoria statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT fyfejanetam statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT tayeelaine statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT johnsonpauldr statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT windeckersarasm statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT goldingnick statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans
AT stineartimothyp statisticalmodelingbasedonstructuredsurveysofaustraliannativepossumexcretaharboringmycobacteriumulceranspredictsburuliulceroccurrenceinhumans