MBECS: Microbiome Batch Effects Correction Suite

Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and eva...

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Autores principales: Olbrich, Michael, Künstner, Axel, Busch, Hauke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2023
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10155362/
https://www.ncbi.nlm.nih.gov/pubmed/37138207
http://dx.doi.org/10.1186/s12859-023-05252-w
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author Olbrich, Michael
Künstner, Axel
Busch, Hauke
author_facet Olbrich, Michael
Künstner, Axel
Busch, Hauke
author_sort Olbrich, Michael
collection PubMed
description Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and evaluation metrics into a software package for the statistical computation framework R. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-023-05252-w.
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spelling pubmed-101553622023-05-04 MBECS: Microbiome Batch Effects Correction Suite Olbrich, Michael Künstner, Axel Busch, Hauke BMC Bioinformatics Software Despite the availability of batch effect correcting algorithms (BECA), no comprehensive tool that combines batch correction and evaluation of the results exists for microbiome datasets. This work outlines the Microbiome Batch Effects Correction Suite development that integrates several BECAs and evaluation metrics into a software package for the statistical computation framework R. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12859-023-05252-w. BioMed Central 2023-05-03 /pmc/articles/PMC10155362/ /pubmed/37138207 http://dx.doi.org/10.1186/s12859-023-05252-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Software
Olbrich, Michael
Künstner, Axel
Busch, Hauke
MBECS: Microbiome Batch Effects Correction Suite
title MBECS: Microbiome Batch Effects Correction Suite
title_full MBECS: Microbiome Batch Effects Correction Suite
title_fullStr MBECS: Microbiome Batch Effects Correction Suite
title_full_unstemmed MBECS: Microbiome Batch Effects Correction Suite
title_short MBECS: Microbiome Batch Effects Correction Suite
title_sort mbecs: microbiome batch effects correction suite
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10155362/
https://www.ncbi.nlm.nih.gov/pubmed/37138207
http://dx.doi.org/10.1186/s12859-023-05252-w
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