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Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics
Hyperuricemia involves multiple complex metabolisms, but no study has conducted a comprehensive analysis using human blood and urine metabolomics for hyperuricemia. Serum and urine samples from 10 patients with hyperuricemia and 5 controls were collected and analyzed by the UHPLC-MS/MS. Differential...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156710/ https://www.ncbi.nlm.nih.gov/pubmed/37138053 http://dx.doi.org/10.1038/s41598-023-34426-y |
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author | Liu, Hengrui Xie, Ruolin Dai, Qiongqiong Fang, Ji Xu, Yunbo Li, Bo |
author_facet | Liu, Hengrui Xie, Ruolin Dai, Qiongqiong Fang, Ji Xu, Yunbo Li, Bo |
author_sort | Liu, Hengrui |
collection | PubMed |
description | Hyperuricemia involves multiple complex metabolisms, but no study has conducted a comprehensive analysis using human blood and urine metabolomics for hyperuricemia. Serum and urine samples from 10 patients with hyperuricemia and 5 controls were collected and analyzed by the UHPLC-MS/MS. Differential metabolites were identified and used in the enrichment analysis where we collected hyperuricemia target genes. Hyperuricemia kidney differential expressed genes (DEGs) were identified using RNA-sequencing data from the hyperuricemia mouse model induced by the potassium oxonate. A Mendelian randomization analysis of the association between caffeine-containing drinks and gout risk was conducted. An intersection analysis between hyperuricemia target genes and hyperuricemia kidney DEGs was conducted and the resulting genes were used for network analysis using the STRING. 227 differential metabolites were identified as differential metabolites and were enriched in 7 KEGG pathways, among which “Caffeine metabolism” was the top. The Mendelian randomization analysis revealed a significant association between tea or coffee intake and gout risk. There were 2173 genes that were identified as hyperuricemia kidney DEGs from mouse data. The intersection analysis identified 51 genes for the hyperuricemia regulation network. A hyperuricemia regulation protein network in the kidney was constructed. This study suggested a potential association between caffeine and hyperuricemia and constructed a hyperuricemia regulation network for future reference. |
format | Online Article Text |
id | pubmed-10156710 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101567102023-05-05 Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics Liu, Hengrui Xie, Ruolin Dai, Qiongqiong Fang, Ji Xu, Yunbo Li, Bo Sci Rep Article Hyperuricemia involves multiple complex metabolisms, but no study has conducted a comprehensive analysis using human blood and urine metabolomics for hyperuricemia. Serum and urine samples from 10 patients with hyperuricemia and 5 controls were collected and analyzed by the UHPLC-MS/MS. Differential metabolites were identified and used in the enrichment analysis where we collected hyperuricemia target genes. Hyperuricemia kidney differential expressed genes (DEGs) were identified using RNA-sequencing data from the hyperuricemia mouse model induced by the potassium oxonate. A Mendelian randomization analysis of the association between caffeine-containing drinks and gout risk was conducted. An intersection analysis between hyperuricemia target genes and hyperuricemia kidney DEGs was conducted and the resulting genes were used for network analysis using the STRING. 227 differential metabolites were identified as differential metabolites and were enriched in 7 KEGG pathways, among which “Caffeine metabolism” was the top. The Mendelian randomization analysis revealed a significant association between tea or coffee intake and gout risk. There were 2173 genes that were identified as hyperuricemia kidney DEGs from mouse data. The intersection analysis identified 51 genes for the hyperuricemia regulation network. A hyperuricemia regulation protein network in the kidney was constructed. This study suggested a potential association between caffeine and hyperuricemia and constructed a hyperuricemia regulation network for future reference. Nature Publishing Group UK 2023-05-03 /pmc/articles/PMC10156710/ /pubmed/37138053 http://dx.doi.org/10.1038/s41598-023-34426-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Liu, Hengrui Xie, Ruolin Dai, Qiongqiong Fang, Ji Xu, Yunbo Li, Bo Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title | Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title_full | Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title_fullStr | Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title_full_unstemmed | Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title_short | Exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
title_sort | exploring the mechanism underlying hyperuricemia using comprehensive research on multi-omics |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156710/ https://www.ncbi.nlm.nih.gov/pubmed/37138053 http://dx.doi.org/10.1038/s41598-023-34426-y |
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