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Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer

Although previous studies conducted on the segmentation of hemorrhage images were based on the U-Net model, which comprises an encoder-decoder architecture, these models exhibit low parameter passing efficiency between the encoder and decoder, large model size, and slow speed. Therefore, to overcome...

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Autores principales: Piao, Zhegao, Gu, Yeong Hyeon, Jin, Hailin, Yoo, Seong Joon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156735/
https://www.ncbi.nlm.nih.gov/pubmed/37137921
http://dx.doi.org/10.1038/s41598-023-33775-y
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author Piao, Zhegao
Gu, Yeong Hyeon
Jin, Hailin
Yoo, Seong Joon
author_facet Piao, Zhegao
Gu, Yeong Hyeon
Jin, Hailin
Yoo, Seong Joon
author_sort Piao, Zhegao
collection PubMed
description Although previous studies conducted on the segmentation of hemorrhage images were based on the U-Net model, which comprises an encoder-decoder architecture, these models exhibit low parameter passing efficiency between the encoder and decoder, large model size, and slow speed. Therefore, to overcome these drawbacks, this study proposes TransHarDNet, an image segmentation model for the diagnosis of intracerebral hemorrhage in CT scan images of the brain. In this model, the HarDNet block is applied to the U-Net architecture, and the encoder and decoder are connected using a transformer block. As a result, the network complexity was reduced and the inference speed improved while maintaining the high performance compared to conventional models. Furthermore, the superiority of the proposed model was verified by using 82,636 CT scan images showing five different types of hemorrhages to train and test the model. Experimental results showed that the proposed model exhibited a Dice coefficient and IoU of 0.712 and 0.597, respectively, in a test set comprising 1200 images of hemorrhage, indicating better performance compared to typical segmentation models such as U-Net, U-Net++, SegNet, PSPNet, and HarDNet. Moreover, the inference time was 30.78 frames per second (FPS), which was faster than all en-coder-decoder-based models except HarDNet.
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spelling pubmed-101567352023-05-05 Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer Piao, Zhegao Gu, Yeong Hyeon Jin, Hailin Yoo, Seong Joon Sci Rep Article Although previous studies conducted on the segmentation of hemorrhage images were based on the U-Net model, which comprises an encoder-decoder architecture, these models exhibit low parameter passing efficiency between the encoder and decoder, large model size, and slow speed. Therefore, to overcome these drawbacks, this study proposes TransHarDNet, an image segmentation model for the diagnosis of intracerebral hemorrhage in CT scan images of the brain. In this model, the HarDNet block is applied to the U-Net architecture, and the encoder and decoder are connected using a transformer block. As a result, the network complexity was reduced and the inference speed improved while maintaining the high performance compared to conventional models. Furthermore, the superiority of the proposed model was verified by using 82,636 CT scan images showing five different types of hemorrhages to train and test the model. Experimental results showed that the proposed model exhibited a Dice coefficient and IoU of 0.712 and 0.597, respectively, in a test set comprising 1200 images of hemorrhage, indicating better performance compared to typical segmentation models such as U-Net, U-Net++, SegNet, PSPNet, and HarDNet. Moreover, the inference time was 30.78 frames per second (FPS), which was faster than all en-coder-decoder-based models except HarDNet. Nature Publishing Group UK 2023-05-03 /pmc/articles/PMC10156735/ /pubmed/37137921 http://dx.doi.org/10.1038/s41598-023-33775-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Piao, Zhegao
Gu, Yeong Hyeon
Jin, Hailin
Yoo, Seong Joon
Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title_full Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title_fullStr Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title_full_unstemmed Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title_short Intracerebral hemorrhage CT scan image segmentation with HarDNet based transformer
title_sort intracerebral hemorrhage ct scan image segmentation with hardnet based transformer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156735/
https://www.ncbi.nlm.nih.gov/pubmed/37137921
http://dx.doi.org/10.1038/s41598-023-33775-y
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