Cargando…
neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time
INTRODUCTION: Research in the field of computational neuroscience relies on highly capable simulation platforms. With real-time capabilities surpassed for established models like the cortical microcircuit, it is time to conceive next-generation systems: neuroscience simulators providing significant...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156974/ https://www.ncbi.nlm.nih.gov/pubmed/37152299 http://dx.doi.org/10.3389/fncom.2023.1144143 |
_version_ | 1785036646476939264 |
---|---|
author | Kauth, Kevin Stadtmann, Tim Sobhani, Vida Gemmeke, Tobias |
author_facet | Kauth, Kevin Stadtmann, Tim Sobhani, Vida Gemmeke, Tobias |
author_sort | Kauth, Kevin |
collection | PubMed |
description | INTRODUCTION: Research in the field of computational neuroscience relies on highly capable simulation platforms. With real-time capabilities surpassed for established models like the cortical microcircuit, it is time to conceive next-generation systems: neuroscience simulators providing significant acceleration, even for larger networks with natural density, biologically plausible multi-compartment models and the modeling of long-term and structural plasticity. METHODS: Stressing the need for agility to adapt to new concepts or findings in the domain of neuroscience, we have developed the neuroAIx-Framework consisting of an empirical modeling tool, a virtual prototype, and a cluster of FPGA boards. This framework is designed to support and accelerate the continuous development of such platforms driven by new insights in neuroscience. RESULTS: Based on design space explorations using this framework, we devised and realized an FPGA cluster consisting of 35 NetFPGA SUME boards. DISCUSSION: This system functions as an evaluation platform for our framework. At the same time, it resulted in a fully deterministic neuroscience simulation system surpassing the state of the art in both performance and energy efficiency. It is capable of simulating the microcircuit with 20× acceleration compared to biological real-time and achieves an energy efficiency of 48nJ per synaptic event. |
format | Online Article Text |
id | pubmed-10156974 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101569742023-05-05 neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time Kauth, Kevin Stadtmann, Tim Sobhani, Vida Gemmeke, Tobias Front Comput Neurosci Neuroscience INTRODUCTION: Research in the field of computational neuroscience relies on highly capable simulation platforms. With real-time capabilities surpassed for established models like the cortical microcircuit, it is time to conceive next-generation systems: neuroscience simulators providing significant acceleration, even for larger networks with natural density, biologically plausible multi-compartment models and the modeling of long-term and structural plasticity. METHODS: Stressing the need for agility to adapt to new concepts or findings in the domain of neuroscience, we have developed the neuroAIx-Framework consisting of an empirical modeling tool, a virtual prototype, and a cluster of FPGA boards. This framework is designed to support and accelerate the continuous development of such platforms driven by new insights in neuroscience. RESULTS: Based on design space explorations using this framework, we devised and realized an FPGA cluster consisting of 35 NetFPGA SUME boards. DISCUSSION: This system functions as an evaluation platform for our framework. At the same time, it resulted in a fully deterministic neuroscience simulation system surpassing the state of the art in both performance and energy efficiency. It is capable of simulating the microcircuit with 20× acceleration compared to biological real-time and achieves an energy efficiency of 48nJ per synaptic event. Frontiers Media S.A. 2023-04-20 /pmc/articles/PMC10156974/ /pubmed/37152299 http://dx.doi.org/10.3389/fncom.2023.1144143 Text en Copyright © 2023 Kauth, Stadtmann, Sobhani and Gemmeke. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Kauth, Kevin Stadtmann, Tim Sobhani, Vida Gemmeke, Tobias neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title | neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title_full | neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title_fullStr | neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title_full_unstemmed | neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title_short | neuroAIx-Framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
title_sort | neuroaix-framework: design of future neuroscience simulation systems exhibiting execution of the cortical microcircuit model 20× faster than biological real-time |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10156974/ https://www.ncbi.nlm.nih.gov/pubmed/37152299 http://dx.doi.org/10.3389/fncom.2023.1144143 |
work_keys_str_mv | AT kauthkevin neuroaixframeworkdesignoffutureneurosciencesimulationsystemsexhibitingexecutionofthecorticalmicrocircuitmodel20fasterthanbiologicalrealtime AT stadtmanntim neuroaixframeworkdesignoffutureneurosciencesimulationsystemsexhibitingexecutionofthecorticalmicrocircuitmodel20fasterthanbiologicalrealtime AT sobhanivida neuroaixframeworkdesignoffutureneurosciencesimulationsystemsexhibitingexecutionofthecorticalmicrocircuitmodel20fasterthanbiologicalrealtime AT gemmeketobias neuroaixframeworkdesignoffutureneurosciencesimulationsystemsexhibitingexecutionofthecorticalmicrocircuitmodel20fasterthanbiologicalrealtime |