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Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources

As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data...

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Autores principales: Wong, Edith D, Miyasato, Stuart R, Aleksander, Suzi, Karra, Kalpana, Nash, Robert S, Skrzypek, Marek S, Weng, Shuai, Engel, Stacia R, Cherry, J Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10158836/
https://www.ncbi.nlm.nih.gov/pubmed/36607068
http://dx.doi.org/10.1093/genetics/iyac191
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author Wong, Edith D
Miyasato, Stuart R
Aleksander, Suzi
Karra, Kalpana
Nash, Robert S
Skrzypek, Marek S
Weng, Shuai
Engel, Stacia R
Cherry, J Michael
author_facet Wong, Edith D
Miyasato, Stuart R
Aleksander, Suzi
Karra, Kalpana
Nash, Robert S
Skrzypek, Marek S
Weng, Shuai
Engel, Stacia R
Cherry, J Michael
author_sort Wong, Edith D
collection PubMed
description As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data from, and collaboration with, other knowledgebases. We are continuing to make steps toward providing the community with an S. cerevisiae pan-genome. Here, we describe software upgrades, a new nomenclature system for genes not found in the reference strain, and additions to gene pages. With these improvements, we aim to remain a leading resource for students, researchers, and the broader scientific community.
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spelling pubmed-101588362023-05-05 Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources Wong, Edith D Miyasato, Stuart R Aleksander, Suzi Karra, Kalpana Nash, Robert S Skrzypek, Marek S Weng, Shuai Engel, Stacia R Cherry, J Michael Genetics Knowledgebase and Database Resources As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data from, and collaboration with, other knowledgebases. We are continuing to make steps toward providing the community with an S. cerevisiae pan-genome. Here, we describe software upgrades, a new nomenclature system for genes not found in the reference strain, and additions to gene pages. With these improvements, we aim to remain a leading resource for students, researchers, and the broader scientific community. Oxford University Press 2023-01-04 /pmc/articles/PMC10158836/ /pubmed/36607068 http://dx.doi.org/10.1093/genetics/iyac191 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Knowledgebase and Database Resources
Wong, Edith D
Miyasato, Stuart R
Aleksander, Suzi
Karra, Kalpana
Nash, Robert S
Skrzypek, Marek S
Weng, Shuai
Engel, Stacia R
Cherry, J Michael
Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title_full Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title_fullStr Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title_full_unstemmed Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title_short Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
title_sort saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
topic Knowledgebase and Database Resources
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10158836/
https://www.ncbi.nlm.nih.gov/pubmed/36607068
http://dx.doi.org/10.1093/genetics/iyac191
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