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Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources
As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10158836/ https://www.ncbi.nlm.nih.gov/pubmed/36607068 http://dx.doi.org/10.1093/genetics/iyac191 |
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author | Wong, Edith D Miyasato, Stuart R Aleksander, Suzi Karra, Kalpana Nash, Robert S Skrzypek, Marek S Weng, Shuai Engel, Stacia R Cherry, J Michael |
author_facet | Wong, Edith D Miyasato, Stuart R Aleksander, Suzi Karra, Kalpana Nash, Robert S Skrzypek, Marek S Weng, Shuai Engel, Stacia R Cherry, J Michael |
author_sort | Wong, Edith D |
collection | PubMed |
description | As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data from, and collaboration with, other knowledgebases. We are continuing to make steps toward providing the community with an S. cerevisiae pan-genome. Here, we describe software upgrades, a new nomenclature system for genes not found in the reference strain, and additions to gene pages. With these improvements, we aim to remain a leading resource for students, researchers, and the broader scientific community. |
format | Online Article Text |
id | pubmed-10158836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-101588362023-05-05 Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources Wong, Edith D Miyasato, Stuart R Aleksander, Suzi Karra, Kalpana Nash, Robert S Skrzypek, Marek S Weng, Shuai Engel, Stacia R Cherry, J Michael Genetics Knowledgebase and Database Resources As one of the first model organism knowledgebases, Saccharomyces Genome Database (SGD) has been supporting the scientific research community since 1993. As technologies and research evolve, so does SGD: from updates in software architecture, to curation of novel data types, to incorporation of data from, and collaboration with, other knowledgebases. We are continuing to make steps toward providing the community with an S. cerevisiae pan-genome. Here, we describe software upgrades, a new nomenclature system for genes not found in the reference strain, and additions to gene pages. With these improvements, we aim to remain a leading resource for students, researchers, and the broader scientific community. Oxford University Press 2023-01-04 /pmc/articles/PMC10158836/ /pubmed/36607068 http://dx.doi.org/10.1093/genetics/iyac191 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of the Genetics Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Knowledgebase and Database Resources Wong, Edith D Miyasato, Stuart R Aleksander, Suzi Karra, Kalpana Nash, Robert S Skrzypek, Marek S Weng, Shuai Engel, Stacia R Cherry, J Michael Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title | Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title_full | Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title_fullStr | Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title_full_unstemmed | Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title_short | Saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
title_sort | saccharomyces genome database update: server architecture, pan-genome nomenclature, and external resources |
topic | Knowledgebase and Database Resources |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10158836/ https://www.ncbi.nlm.nih.gov/pubmed/36607068 http://dx.doi.org/10.1093/genetics/iyac191 |
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