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Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high co...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159343/ https://www.ncbi.nlm.nih.gov/pubmed/37093855 http://dx.doi.org/10.1371/journal.pcbi.1011055 |
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author | Pajaziti, Endrit Montalt-Tordera, Javier Capelli, Claudio Sivera, Raphaël Sauvage, Emilie Quail, Michael Schievano, Silvia Muthurangu, Vivek |
author_facet | Pajaziti, Endrit Montalt-Tordera, Javier Capelli, Claudio Sivera, Raphaël Sauvage, Emilie Quail, Michael Schievano, Silvia Muthurangu, Vivek |
author_sort | Pajaziti, Endrit |
collection | PubMed |
description | Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high computational resources, specialist experience needed for designing simulation set-ups, and long processing times. The aim of this study was to explore the use of machine learning (ML) to replicate conventional aortic CFD with automatic and fast regression models. Data used to train/test the model consisted of 3,000 CFD simulations performed on synthetically generated 3D aortic shapes. These subjects were generated from a statistical shape model (SSM) built on real patient-specific aortas (N = 67). Inference performed on 200 test shapes resulted in average errors of 6.01% ±3.12 SD and 3.99% ±0.93 SD for pressure and velocity, respectively. Our ML-based models performed CFD in ∼0.075 seconds (4,000x faster than the solver). This proof-of-concept study shows that results from conventional vascular CFD can be reproduced using ML at a much faster rate, in an automatic process, and with reasonable accuracy. |
format | Online Article Text |
id | pubmed-10159343 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-101593432023-05-05 Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields Pajaziti, Endrit Montalt-Tordera, Javier Capelli, Claudio Sivera, Raphaël Sauvage, Emilie Quail, Michael Schievano, Silvia Muthurangu, Vivek PLoS Comput Biol Research Article Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high computational resources, specialist experience needed for designing simulation set-ups, and long processing times. The aim of this study was to explore the use of machine learning (ML) to replicate conventional aortic CFD with automatic and fast regression models. Data used to train/test the model consisted of 3,000 CFD simulations performed on synthetically generated 3D aortic shapes. These subjects were generated from a statistical shape model (SSM) built on real patient-specific aortas (N = 67). Inference performed on 200 test shapes resulted in average errors of 6.01% ±3.12 SD and 3.99% ±0.93 SD for pressure and velocity, respectively. Our ML-based models performed CFD in ∼0.075 seconds (4,000x faster than the solver). This proof-of-concept study shows that results from conventional vascular CFD can be reproduced using ML at a much faster rate, in an automatic process, and with reasonable accuracy. Public Library of Science 2023-04-24 /pmc/articles/PMC10159343/ /pubmed/37093855 http://dx.doi.org/10.1371/journal.pcbi.1011055 Text en © 2023 Pajaziti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Pajaziti, Endrit Montalt-Tordera, Javier Capelli, Claudio Sivera, Raphaël Sauvage, Emilie Quail, Michael Schievano, Silvia Muthurangu, Vivek Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title | Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title_full | Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title_fullStr | Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title_full_unstemmed | Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title_short | Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields |
title_sort | shape-driven deep neural networks for fast acquisition of aortic 3d pressure and velocity flow fields |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159343/ https://www.ncbi.nlm.nih.gov/pubmed/37093855 http://dx.doi.org/10.1371/journal.pcbi.1011055 |
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