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Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields

Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high co...

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Autores principales: Pajaziti, Endrit, Montalt-Tordera, Javier, Capelli, Claudio, Sivera, Raphaël, Sauvage, Emilie, Quail, Michael, Schievano, Silvia, Muthurangu, Vivek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159343/
https://www.ncbi.nlm.nih.gov/pubmed/37093855
http://dx.doi.org/10.1371/journal.pcbi.1011055
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author Pajaziti, Endrit
Montalt-Tordera, Javier
Capelli, Claudio
Sivera, Raphaël
Sauvage, Emilie
Quail, Michael
Schievano, Silvia
Muthurangu, Vivek
author_facet Pajaziti, Endrit
Montalt-Tordera, Javier
Capelli, Claudio
Sivera, Raphaël
Sauvage, Emilie
Quail, Michael
Schievano, Silvia
Muthurangu, Vivek
author_sort Pajaziti, Endrit
collection PubMed
description Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high computational resources, specialist experience needed for designing simulation set-ups, and long processing times. The aim of this study was to explore the use of machine learning (ML) to replicate conventional aortic CFD with automatic and fast regression models. Data used to train/test the model consisted of 3,000 CFD simulations performed on synthetically generated 3D aortic shapes. These subjects were generated from a statistical shape model (SSM) built on real patient-specific aortas (N = 67). Inference performed on 200 test shapes resulted in average errors of 6.01% ±3.12 SD and 3.99% ±0.93 SD for pressure and velocity, respectively. Our ML-based models performed CFD in ∼0.075 seconds (4,000x faster than the solver). This proof-of-concept study shows that results from conventional vascular CFD can be reproduced using ML at a much faster rate, in an automatic process, and with reasonable accuracy.
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spelling pubmed-101593432023-05-05 Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields Pajaziti, Endrit Montalt-Tordera, Javier Capelli, Claudio Sivera, Raphaël Sauvage, Emilie Quail, Michael Schievano, Silvia Muthurangu, Vivek PLoS Comput Biol Research Article Computational fluid dynamics (CFD) can be used to simulate vascular haemodynamics and analyse potential treatment options. CFD has shown to be beneficial in improving patient outcomes. However, the implementation of CFD for routine clinical use is yet to be realised. Barriers for CFD include high computational resources, specialist experience needed for designing simulation set-ups, and long processing times. The aim of this study was to explore the use of machine learning (ML) to replicate conventional aortic CFD with automatic and fast regression models. Data used to train/test the model consisted of 3,000 CFD simulations performed on synthetically generated 3D aortic shapes. These subjects were generated from a statistical shape model (SSM) built on real patient-specific aortas (N = 67). Inference performed on 200 test shapes resulted in average errors of 6.01% ±3.12 SD and 3.99% ±0.93 SD for pressure and velocity, respectively. Our ML-based models performed CFD in ∼0.075 seconds (4,000x faster than the solver). This proof-of-concept study shows that results from conventional vascular CFD can be reproduced using ML at a much faster rate, in an automatic process, and with reasonable accuracy. Public Library of Science 2023-04-24 /pmc/articles/PMC10159343/ /pubmed/37093855 http://dx.doi.org/10.1371/journal.pcbi.1011055 Text en © 2023 Pajaziti et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Pajaziti, Endrit
Montalt-Tordera, Javier
Capelli, Claudio
Sivera, Raphaël
Sauvage, Emilie
Quail, Michael
Schievano, Silvia
Muthurangu, Vivek
Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title_full Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title_fullStr Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title_full_unstemmed Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title_short Shape-driven deep neural networks for fast acquisition of aortic 3D pressure and velocity flow fields
title_sort shape-driven deep neural networks for fast acquisition of aortic 3d pressure and velocity flow fields
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159343/
https://www.ncbi.nlm.nih.gov/pubmed/37093855
http://dx.doi.org/10.1371/journal.pcbi.1011055
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