Cargando…

The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees

Gaining knowledge on bees is of the utmost importance due to the paramount role that they play in angiosperm pollination. Herein, we provide the first genome assembly of Colletes collaris, a pan-Eurasian cellophane bee. We sequenced 50.53 Gbp of long-read data plus 57.36 Gbp of short-read data in Ox...

Descripción completa

Detalles Bibliográficos
Autores principales: Ferrari, Rafael R, Batista, Thiago M, Zhou, Qing-Song, Hilário, Heron O, Orr, Michael C, Luo, Arong, Zhu, Chao-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159585/
https://www.ncbi.nlm.nih.gov/pubmed/37075227
http://dx.doi.org/10.1093/gbe/evad062
_version_ 1785037136471261184
author Ferrari, Rafael R
Batista, Thiago M
Zhou, Qing-Song
Hilário, Heron O
Orr, Michael C
Luo, Arong
Zhu, Chao-Dong
author_facet Ferrari, Rafael R
Batista, Thiago M
Zhou, Qing-Song
Hilário, Heron O
Orr, Michael C
Luo, Arong
Zhu, Chao-Dong
author_sort Ferrari, Rafael R
collection PubMed
description Gaining knowledge on bees is of the utmost importance due to the paramount role that they play in angiosperm pollination. Herein, we provide the first genome assembly of Colletes collaris, a pan-Eurasian cellophane bee. We sequenced 50.53 Gbp of long-read data plus 57.36 Gbp of short-read data in Oxford Nanopore Technologies and Illumina platforms, respectively. The genome assembly consisted of 374.75 Mbp distributed across 374 contigs, with L50 and N50 of 9 and 8.96 Mbp, respectively. We predicted the genome to comprise 20,399 protein-coding genes, 467,947 repeats, and 4,315 non-coding RNA genes. The transcriptome and mitochondrial genome of the species were also assembled. Gene family analysis with 15 insect species identified 14,417 families, 9,517 of them found in C. collaris. A dated phylogenomic analysis revealed high numbers of orthogroups experiencing rapid evolution within Colletes.
format Online
Article
Text
id pubmed-10159585
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-101595852023-05-05 The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees Ferrari, Rafael R Batista, Thiago M Zhou, Qing-Song Hilário, Heron O Orr, Michael C Luo, Arong Zhu, Chao-Dong Genome Biol Evol Genome Report Gaining knowledge on bees is of the utmost importance due to the paramount role that they play in angiosperm pollination. Herein, we provide the first genome assembly of Colletes collaris, a pan-Eurasian cellophane bee. We sequenced 50.53 Gbp of long-read data plus 57.36 Gbp of short-read data in Oxford Nanopore Technologies and Illumina platforms, respectively. The genome assembly consisted of 374.75 Mbp distributed across 374 contigs, with L50 and N50 of 9 and 8.96 Mbp, respectively. We predicted the genome to comprise 20,399 protein-coding genes, 467,947 repeats, and 4,315 non-coding RNA genes. The transcriptome and mitochondrial genome of the species were also assembled. Gene family analysis with 15 insect species identified 14,417 families, 9,517 of them found in C. collaris. A dated phylogenomic analysis revealed high numbers of orthogroups experiencing rapid evolution within Colletes. Oxford University Press 2023-04-19 /pmc/articles/PMC10159585/ /pubmed/37075227 http://dx.doi.org/10.1093/gbe/evad062 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Society for Molecular Biology and Evolution. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Genome Report
Ferrari, Rafael R
Batista, Thiago M
Zhou, Qing-Song
Hilário, Heron O
Orr, Michael C
Luo, Arong
Zhu, Chao-Dong
The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title_full The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title_fullStr The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title_full_unstemmed The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title_short The Whole Genome of Colletes collaris (Hymenoptera: Colletidae): An Important Step in Comparative Genomics of Cellophane Bees
title_sort whole genome of colletes collaris (hymenoptera: colletidae): an important step in comparative genomics of cellophane bees
topic Genome Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10159585/
https://www.ncbi.nlm.nih.gov/pubmed/37075227
http://dx.doi.org/10.1093/gbe/evad062
work_keys_str_mv AT ferrarirafaelr thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT batistathiagom thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT zhouqingsong thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT hilarioherono thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT orrmichaelc thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT luoarong thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT zhuchaodong thewholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT ferrarirafaelr wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT batistathiagom wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT zhouqingsong wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT hilarioherono wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT orrmichaelc wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT luoarong wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees
AT zhuchaodong wholegenomeofcolletescollarishymenopteracolletidaeanimportantstepincomparativegenomicsofcellophanebees