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Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman

Nitrogen (N) is an essential element for life. N compounds such as ammonium ([Formula: see text]) may act as electron donors, while nitrate ([Formula: see text]) and nitrite ([Formula: see text]) may serve as electron acceptors to support energy metabolism. However, little is known regarding the ava...

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Autores principales: Rempfert, Kaitlin R., Nothaft, Daniel B., Kraus, Emily A., Asamoto, Ciara K., Evans, R. Dave, Spear, John R., Matter, Juerg M., Kopf, Sebastian H., Templeton, Alexis S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160414/
https://www.ncbi.nlm.nih.gov/pubmed/37152731
http://dx.doi.org/10.3389/fmicb.2023.1139633
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author Rempfert, Kaitlin R.
Nothaft, Daniel B.
Kraus, Emily A.
Asamoto, Ciara K.
Evans, R. Dave
Spear, John R.
Matter, Juerg M.
Kopf, Sebastian H.
Templeton, Alexis S.
author_facet Rempfert, Kaitlin R.
Nothaft, Daniel B.
Kraus, Emily A.
Asamoto, Ciara K.
Evans, R. Dave
Spear, John R.
Matter, Juerg M.
Kopf, Sebastian H.
Templeton, Alexis S.
author_sort Rempfert, Kaitlin R.
collection PubMed
description Nitrogen (N) is an essential element for life. N compounds such as ammonium ([Formula: see text]) may act as electron donors, while nitrate ([Formula: see text]) and nitrite ([Formula: see text]) may serve as electron acceptors to support energy metabolism. However, little is known regarding the availability and forms of N in subsurface ecosystems, particularly in serpentinite-hosted settings where hydrogen (H(2)) generated through water–rock reactions promotes habitable conditions for microbial life. Here, we analyzed N and oxygen (O) isotope composition to investigate the source, abundance, and cycling of N species within the Samail Ophiolite of Oman. The dominant dissolved N species was dependent on the fluid type, with Mg(2+)- [Formula: see text] type fluids comprised mostly of [Formula: see text] , and Ca(2+)-OH(−) fluids comprised primarily of ammonia (NH(3)). We infer that fixed N is introduced to the serpentinite aquifer as [Formula: see text]. High concentrations of [Formula: see text] (>100 μM) with a relict meteoric oxygen isotopic composition (δ(18)O ~ 22‰, Δ(17)O ~ 6‰) were observed in shallow aquifer fluids, indicative of [Formula: see text] sourced from atmospheric deposition (rainwater [Formula: see text]: δ(18)O of 53.7‰, Δ(17)O of 16.8‰) mixed with [Formula: see text] produced in situ through nitrification (estimated endmember δ(18)O and Δ(17)O of ~0‰). Conversely, highly reacted hyperalkaline fluids had high concentrations of NH(3) (>100 μM) with little [Formula: see text] detectable. We interpret that NH(3) in hyperalkaline fluids is a product of [Formula: see text] reduction. The proportionality of the O and N isotope fractionation ((18)ε / (15)ε) measured in Samail Ophiolite [Formula: see text] was close to unity ((18)ε / (15)ε ~ 1), which is consistent with dissimilatory [Formula: see text] reduction with a membrane-bound reductase (NarG); however, abiotic reduction processes may also be occurring. The presence of genes commonly involved in N reduction processes (narG, napA, nrfA) in the metagenomes of biomass sourced from aquifer fluids supports potential biological involvement in the consumption of [Formula: see text]. Production of [Formula: see text] as the end-product of [Formula: see text] reduction via dissimilatory nitrate reduction to ammonium (DNRA) could retain N in the subsurface and fuel nitrification in the oxygenated near surface. Elevated bioavailable N in all sampled fluids indicates that N is not likely limiting as a nutrient in serpentinites of the Samail Ophiolite.
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spelling pubmed-101604142023-05-06 Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman Rempfert, Kaitlin R. Nothaft, Daniel B. Kraus, Emily A. Asamoto, Ciara K. Evans, R. Dave Spear, John R. Matter, Juerg M. Kopf, Sebastian H. Templeton, Alexis S. Front Microbiol Microbiology Nitrogen (N) is an essential element for life. N compounds such as ammonium ([Formula: see text]) may act as electron donors, while nitrate ([Formula: see text]) and nitrite ([Formula: see text]) may serve as electron acceptors to support energy metabolism. However, little is known regarding the availability and forms of N in subsurface ecosystems, particularly in serpentinite-hosted settings where hydrogen (H(2)) generated through water–rock reactions promotes habitable conditions for microbial life. Here, we analyzed N and oxygen (O) isotope composition to investigate the source, abundance, and cycling of N species within the Samail Ophiolite of Oman. The dominant dissolved N species was dependent on the fluid type, with Mg(2+)- [Formula: see text] type fluids comprised mostly of [Formula: see text] , and Ca(2+)-OH(−) fluids comprised primarily of ammonia (NH(3)). We infer that fixed N is introduced to the serpentinite aquifer as [Formula: see text]. High concentrations of [Formula: see text] (>100 μM) with a relict meteoric oxygen isotopic composition (δ(18)O ~ 22‰, Δ(17)O ~ 6‰) were observed in shallow aquifer fluids, indicative of [Formula: see text] sourced from atmospheric deposition (rainwater [Formula: see text]: δ(18)O of 53.7‰, Δ(17)O of 16.8‰) mixed with [Formula: see text] produced in situ through nitrification (estimated endmember δ(18)O and Δ(17)O of ~0‰). Conversely, highly reacted hyperalkaline fluids had high concentrations of NH(3) (>100 μM) with little [Formula: see text] detectable. We interpret that NH(3) in hyperalkaline fluids is a product of [Formula: see text] reduction. The proportionality of the O and N isotope fractionation ((18)ε / (15)ε) measured in Samail Ophiolite [Formula: see text] was close to unity ((18)ε / (15)ε ~ 1), which is consistent with dissimilatory [Formula: see text] reduction with a membrane-bound reductase (NarG); however, abiotic reduction processes may also be occurring. The presence of genes commonly involved in N reduction processes (narG, napA, nrfA) in the metagenomes of biomass sourced from aquifer fluids supports potential biological involvement in the consumption of [Formula: see text]. Production of [Formula: see text] as the end-product of [Formula: see text] reduction via dissimilatory nitrate reduction to ammonium (DNRA) could retain N in the subsurface and fuel nitrification in the oxygenated near surface. Elevated bioavailable N in all sampled fluids indicates that N is not likely limiting as a nutrient in serpentinites of the Samail Ophiolite. Frontiers Media S.A. 2023-04-21 /pmc/articles/PMC10160414/ /pubmed/37152731 http://dx.doi.org/10.3389/fmicb.2023.1139633 Text en Copyright © 2023 Rempfert, Nothaft, Kraus, Asamoto, Evans, Spear, Matter, Kopf and Templeton. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Rempfert, Kaitlin R.
Nothaft, Daniel B.
Kraus, Emily A.
Asamoto, Ciara K.
Evans, R. Dave
Spear, John R.
Matter, Juerg M.
Kopf, Sebastian H.
Templeton, Alexis S.
Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title_full Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title_fullStr Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title_full_unstemmed Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title_short Subsurface biogeochemical cycling of nitrogen in the actively serpentinizing Samail Ophiolite, Oman
title_sort subsurface biogeochemical cycling of nitrogen in the actively serpentinizing samail ophiolite, oman
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160414/
https://www.ncbi.nlm.nih.gov/pubmed/37152731
http://dx.doi.org/10.3389/fmicb.2023.1139633
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