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Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma
BACKGROUND: Gliomas are the most common primary tumors of the central nervous system and portend a poor prognosis. The efficacy of emerging and promising immunotherapies varies significantly among individuals. Distinction and transformation of cold and hot tumors may improve the antitumor efficacy o...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160458/ https://www.ncbi.nlm.nih.gov/pubmed/37152037 http://dx.doi.org/10.3389/fonc.2023.1087117 |
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author | Cao, Kangxi Su, Fengbo Shan, Xuchun Jiang, Xingyu Ni, Zhaohui Chen, Yan |
author_facet | Cao, Kangxi Su, Fengbo Shan, Xuchun Jiang, Xingyu Ni, Zhaohui Chen, Yan |
author_sort | Cao, Kangxi |
collection | PubMed |
description | BACKGROUND: Gliomas are the most common primary tumors of the central nervous system and portend a poor prognosis. The efficacy of emerging and promising immunotherapies varies significantly among individuals. Distinction and transformation of cold and hot tumors may improve the antitumor efficacy of immunotherapy. METHODS AND RESULTS: In this study, we constructed a necroptosis-related lncRNA module based on public databases. The association of this module with survival was assessed using the Cox regression, Kaplan-Meier survival analysis, and nomogram, external validation was also conducted in another public database. Furthermore, we performed gene set enrichment analysis (GSEA), immune checkpoint and tumor microenvironment analysis, and in vitro qRT-PCR validation. Finally, we clustered all samples into 2 clusters based on the expression of model lncRNAs and identified cluster 1 as cold tumors with fewer infiltrating T cells. CONCLUSIONS: Identifying cold and hot tumors by necroptosis-related lncRNAs can help available immunotherapeutic strategies to achieve efficacy in the precise treatment of individuals. Prior treatment failure can be overcome by targeting necroptosis-related lncRNAs. |
format | Online Article Text |
id | pubmed-10160458 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101604582023-05-06 Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma Cao, Kangxi Su, Fengbo Shan, Xuchun Jiang, Xingyu Ni, Zhaohui Chen, Yan Front Oncol Oncology BACKGROUND: Gliomas are the most common primary tumors of the central nervous system and portend a poor prognosis. The efficacy of emerging and promising immunotherapies varies significantly among individuals. Distinction and transformation of cold and hot tumors may improve the antitumor efficacy of immunotherapy. METHODS AND RESULTS: In this study, we constructed a necroptosis-related lncRNA module based on public databases. The association of this module with survival was assessed using the Cox regression, Kaplan-Meier survival analysis, and nomogram, external validation was also conducted in another public database. Furthermore, we performed gene set enrichment analysis (GSEA), immune checkpoint and tumor microenvironment analysis, and in vitro qRT-PCR validation. Finally, we clustered all samples into 2 clusters based on the expression of model lncRNAs and identified cluster 1 as cold tumors with fewer infiltrating T cells. CONCLUSIONS: Identifying cold and hot tumors by necroptosis-related lncRNAs can help available immunotherapeutic strategies to achieve efficacy in the precise treatment of individuals. Prior treatment failure can be overcome by targeting necroptosis-related lncRNAs. Frontiers Media S.A. 2023-04-21 /pmc/articles/PMC10160458/ /pubmed/37152037 http://dx.doi.org/10.3389/fonc.2023.1087117 Text en Copyright © 2023 Cao, Su, Shan, Jiang, Ni and Chen https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Oncology Cao, Kangxi Su, Fengbo Shan, Xuchun Jiang, Xingyu Ni, Zhaohui Chen, Yan Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title | Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title_full | Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title_fullStr | Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title_full_unstemmed | Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title_short | Necroptosis-related lncRNAs: establishment of a gene module and distinction between the cold and hot tumors in glioma |
title_sort | necroptosis-related lncrnas: establishment of a gene module and distinction between the cold and hot tumors in glioma |
topic | Oncology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160458/ https://www.ncbi.nlm.nih.gov/pubmed/37152037 http://dx.doi.org/10.3389/fonc.2023.1087117 |
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