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Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique

The Countrywide Mortality Surveillance for Action platform is collecting verbal autopsy (VA) records from a nationally representative sample in Mozambique. These records are used to estimate the national and subnational cause-specific mortality fractions (CSMFs) for children (1–59 months) and neonat...

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Autores principales: Gilbert, Brian, Fiksel, Jacob, Wilson, Emily, Kalter, Henry, Kante, Almamy, Akum, Aveika, Blau, Dianna, Bassat, Quique, Macicame, Ivalda, Samo Gudo, Eduardo, Black, Robert, Zeger, Scott, Amouzou, Agbessi, Datta, Abhirup
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The American Society of Tropical Medicine and Hygiene 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160855/
https://www.ncbi.nlm.nih.gov/pubmed/37037430
http://dx.doi.org/10.4269/ajtmh.22-0319
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author Gilbert, Brian
Fiksel, Jacob
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
author_facet Gilbert, Brian
Fiksel, Jacob
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
author_sort Gilbert, Brian
collection PubMed
description The Countrywide Mortality Surveillance for Action platform is collecting verbal autopsy (VA) records from a nationally representative sample in Mozambique. These records are used to estimate the national and subnational cause-specific mortality fractions (CSMFs) for children (1–59 months) and neonates (1–28 days). Cross-tabulation of VA-based cause-of-death (COD) determination against that from the minimally invasive tissue sampling (MITS) from the Child Health and Mortality Prevention project revealed important misclassification errors for all the VA algorithms, which if not accounted for will lead to bias in the estimates of CSMF from VA. A recently proposed Bayesian VA-calibration method is used that accounts for this misclassification bias and produces calibrated estimates of CSMF. Both the VA-COD and the MITS-COD can be multi-cause (i.e., suggest more than one probable COD for some of the records). To fully use this probabilistic COD data, we use the multi-cause VA calibration. Two different computer-coded VA algorithms are considered—InSilicoVA and EAVA—and the final CSMF estimates are obtained using an ensemble calibration that uses data from both the algorithms. The calibrated estimates consistently offer a better fit to the data and reveal important changes in the CSMF for both children and neonates in Mozambique after accounting for VA misclassification bias.
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spelling pubmed-101608552023-05-06 Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique Gilbert, Brian Fiksel, Jacob Wilson, Emily Kalter, Henry Kante, Almamy Akum, Aveika Blau, Dianna Bassat, Quique Macicame, Ivalda Samo Gudo, Eduardo Black, Robert Zeger, Scott Amouzou, Agbessi Datta, Abhirup Am J Trop Med Hyg Research Article The Countrywide Mortality Surveillance for Action platform is collecting verbal autopsy (VA) records from a nationally representative sample in Mozambique. These records are used to estimate the national and subnational cause-specific mortality fractions (CSMFs) for children (1–59 months) and neonates (1–28 days). Cross-tabulation of VA-based cause-of-death (COD) determination against that from the minimally invasive tissue sampling (MITS) from the Child Health and Mortality Prevention project revealed important misclassification errors for all the VA algorithms, which if not accounted for will lead to bias in the estimates of CSMF from VA. A recently proposed Bayesian VA-calibration method is used that accounts for this misclassification bias and produces calibrated estimates of CSMF. Both the VA-COD and the MITS-COD can be multi-cause (i.e., suggest more than one probable COD for some of the records). To fully use this probabilistic COD data, we use the multi-cause VA calibration. Two different computer-coded VA algorithms are considered—InSilicoVA and EAVA—and the final CSMF estimates are obtained using an ensemble calibration that uses data from both the algorithms. The calibrated estimates consistently offer a better fit to the data and reveal important changes in the CSMF for both children and neonates in Mozambique after accounting for VA misclassification bias. The American Society of Tropical Medicine and Hygiene 2023-04-10 2023-05 /pmc/articles/PMC10160855/ /pubmed/37037430 http://dx.doi.org/10.4269/ajtmh.22-0319 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Gilbert, Brian
Fiksel, Jacob
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title_full Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title_fullStr Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title_full_unstemmed Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title_short Multi-Cause Calibration of Verbal Autopsy–Based Cause-Specific Mortality Estimates of Children and Neonates in Mozambique
title_sort multi-cause calibration of verbal autopsy–based cause-specific mortality estimates of children and neonates in mozambique
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160855/
https://www.ncbi.nlm.nih.gov/pubmed/37037430
http://dx.doi.org/10.4269/ajtmh.22-0319
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