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Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates

Verbal autopsies (VAs) are extensively used to determine cause of death (COD) in many low- and middle-income countries. However, COD determination from VA can be inaccurate. Computer coded verbal autopsy (CCVA) algorithms used for this task are imperfect and misclassify COD for a large proportion of...

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Autores principales: Fiksel, Jacob, Gilbert, Brian, Wilson, Emily, Kalter, Henry, Kante, Almamy, Akum, Aveika, Blau, Dianna, Bassat, Quique, Macicame, Ivalda, Samo Gudo, Eduardo, Black, Robert, Zeger, Scott, Amouzou, Agbessi, Datta, Abhirup
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The American Society of Tropical Medicine and Hygiene 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160858/
https://www.ncbi.nlm.nih.gov/pubmed/37037438
http://dx.doi.org/10.4269/ajtmh.22-0318
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author Fiksel, Jacob
Gilbert, Brian
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
author_facet Fiksel, Jacob
Gilbert, Brian
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
author_sort Fiksel, Jacob
collection PubMed
description Verbal autopsies (VAs) are extensively used to determine cause of death (COD) in many low- and middle-income countries. However, COD determination from VA can be inaccurate. Computer coded verbal autopsy (CCVA) algorithms used for this task are imperfect and misclassify COD for a large proportion of deaths. If not accounted for, this misclassification leads to biased estimates of cause-specific mortality fractions (CSMFs), a critical piece in health-policy making. Recent work has demonstrated that the knowledge of the CCVA misclassification rates can be used to calibrate raw VA-based CSMF estimates to account for the misclassification bias. In this manuscript, we review the current practices and issues with raw COD predictions from CCVA algorithms and provide a complete primer on how to use the VA calibration approach with the calibratedVA software to correct for verbal autopsy misclassification bias in cause-specific mortality estimates. We use calibratedVA to obtain CSMFs for child (1–59 months) and neonatal deaths using VA data from the Countrywide Mortality Surveillance for Action project in Mozambique.
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spelling pubmed-101608582023-05-06 Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates Fiksel, Jacob Gilbert, Brian Wilson, Emily Kalter, Henry Kante, Almamy Akum, Aveika Blau, Dianna Bassat, Quique Macicame, Ivalda Samo Gudo, Eduardo Black, Robert Zeger, Scott Amouzou, Agbessi Datta, Abhirup Am J Trop Med Hyg Research Article Verbal autopsies (VAs) are extensively used to determine cause of death (COD) in many low- and middle-income countries. However, COD determination from VA can be inaccurate. Computer coded verbal autopsy (CCVA) algorithms used for this task are imperfect and misclassify COD for a large proportion of deaths. If not accounted for, this misclassification leads to biased estimates of cause-specific mortality fractions (CSMFs), a critical piece in health-policy making. Recent work has demonstrated that the knowledge of the CCVA misclassification rates can be used to calibrate raw VA-based CSMF estimates to account for the misclassification bias. In this manuscript, we review the current practices and issues with raw COD predictions from CCVA algorithms and provide a complete primer on how to use the VA calibration approach with the calibratedVA software to correct for verbal autopsy misclassification bias in cause-specific mortality estimates. We use calibratedVA to obtain CSMFs for child (1–59 months) and neonatal deaths using VA data from the Countrywide Mortality Surveillance for Action project in Mozambique. The American Society of Tropical Medicine and Hygiene 2023-04-10 2023-05 /pmc/articles/PMC10160858/ /pubmed/37037438 http://dx.doi.org/10.4269/ajtmh.22-0318 Text en © The author(s) https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Fiksel, Jacob
Gilbert, Brian
Wilson, Emily
Kalter, Henry
Kante, Almamy
Akum, Aveika
Blau, Dianna
Bassat, Quique
Macicame, Ivalda
Samo Gudo, Eduardo
Black, Robert
Zeger, Scott
Amouzou, Agbessi
Datta, Abhirup
Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title_full Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title_fullStr Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title_full_unstemmed Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title_short Correcting for Verbal Autopsy Misclassification Bias in Cause-Specific Mortality Estimates
title_sort correcting for verbal autopsy misclassification bias in cause-specific mortality estimates
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10160858/
https://www.ncbi.nlm.nih.gov/pubmed/37037438
http://dx.doi.org/10.4269/ajtmh.22-0318
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