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In diverse conditions, intrinsic chromatin condensates have liquid-like material properties

Nuclear DNA in eukaryotes is wrapped around histone proteins to form nucleosomes on a chromatin fiber. Dynamic folding of the chromatin fiber into loops and variations in the degree of chromatin compaction regulate essential processes such as transcription, recombination, and mitotic chromosome segr...

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Autores principales: Gibson, Bryan A., Blaukopf, Claudia, Lou, Tracy, Chen, Lifeng, Doolittle, Lynda K., Finkelstein, Ilya, Narlikar, Geeta J., Gerlich, Daniel W., Rosen, Michael K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161002/
https://www.ncbi.nlm.nih.gov/pubmed/37094140
http://dx.doi.org/10.1073/pnas.2218085120
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author Gibson, Bryan A.
Blaukopf, Claudia
Lou, Tracy
Chen, Lifeng
Doolittle, Lynda K.
Finkelstein, Ilya
Narlikar, Geeta J.
Gerlich, Daniel W.
Rosen, Michael K.
author_facet Gibson, Bryan A.
Blaukopf, Claudia
Lou, Tracy
Chen, Lifeng
Doolittle, Lynda K.
Finkelstein, Ilya
Narlikar, Geeta J.
Gerlich, Daniel W.
Rosen, Michael K.
author_sort Gibson, Bryan A.
collection PubMed
description Nuclear DNA in eukaryotes is wrapped around histone proteins to form nucleosomes on a chromatin fiber. Dynamic folding of the chromatin fiber into loops and variations in the degree of chromatin compaction regulate essential processes such as transcription, recombination, and mitotic chromosome segregation. Our understanding of the physical properties that allow chromatin to be dynamically remodeled even in highly compacted states is limited. Previously, we reported that chromatin has an intrinsic capacity to phase separate and form dynamic liquid-like condensates, which can be regulated by cellular factors [B. A. Gibson et al., Cell 179, 470–484.e421 (2019)]. Recent contradictory reports claim that a specific set of solution conditions is required for fluidity in condensates that would otherwise be solid [J. C. Hansen, K. Maeshima, M. J. Hendzel, Epigenetics Chromatin 14, 50 (2021); H. Strickfaden et al., Cell 183, 1772–1784.e1713 (2020)]. We sought to resolve these discrepancies, as our ability to translate with confidence these biophysical observations to cells requires their precise characterization. Moreover, whether chromatin assemblies are dynamic or static affects how processes such as transcription, loop extrusion, and remodeling will engage them inside cells. Here, we show in diverse conditions and without specific buffering components that chromatin fragments form phase separated fluids in vitro. We also explore how sample preparation and imaging affect the experimental observation of chromatin condensate dynamics. Last, we describe how liquid-like in vitro behaviors can translate to the locally dynamic but globally constrained chromatin movement observed in cells.
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spelling pubmed-101610022023-05-06 In diverse conditions, intrinsic chromatin condensates have liquid-like material properties Gibson, Bryan A. Blaukopf, Claudia Lou, Tracy Chen, Lifeng Doolittle, Lynda K. Finkelstein, Ilya Narlikar, Geeta J. Gerlich, Daniel W. Rosen, Michael K. Proc Natl Acad Sci U S A Biological Sciences Nuclear DNA in eukaryotes is wrapped around histone proteins to form nucleosomes on a chromatin fiber. Dynamic folding of the chromatin fiber into loops and variations in the degree of chromatin compaction regulate essential processes such as transcription, recombination, and mitotic chromosome segregation. Our understanding of the physical properties that allow chromatin to be dynamically remodeled even in highly compacted states is limited. Previously, we reported that chromatin has an intrinsic capacity to phase separate and form dynamic liquid-like condensates, which can be regulated by cellular factors [B. A. Gibson et al., Cell 179, 470–484.e421 (2019)]. Recent contradictory reports claim that a specific set of solution conditions is required for fluidity in condensates that would otherwise be solid [J. C. Hansen, K. Maeshima, M. J. Hendzel, Epigenetics Chromatin 14, 50 (2021); H. Strickfaden et al., Cell 183, 1772–1784.e1713 (2020)]. We sought to resolve these discrepancies, as our ability to translate with confidence these biophysical observations to cells requires their precise characterization. Moreover, whether chromatin assemblies are dynamic or static affects how processes such as transcription, loop extrusion, and remodeling will engage them inside cells. Here, we show in diverse conditions and without specific buffering components that chromatin fragments form phase separated fluids in vitro. We also explore how sample preparation and imaging affect the experimental observation of chromatin condensate dynamics. Last, we describe how liquid-like in vitro behaviors can translate to the locally dynamic but globally constrained chromatin movement observed in cells. National Academy of Sciences 2023-04-24 2023-05-02 /pmc/articles/PMC10161002/ /pubmed/37094140 http://dx.doi.org/10.1073/pnas.2218085120 Text en Copyright © 2023 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by/4.0/This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Biological Sciences
Gibson, Bryan A.
Blaukopf, Claudia
Lou, Tracy
Chen, Lifeng
Doolittle, Lynda K.
Finkelstein, Ilya
Narlikar, Geeta J.
Gerlich, Daniel W.
Rosen, Michael K.
In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title_full In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title_fullStr In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title_full_unstemmed In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title_short In diverse conditions, intrinsic chromatin condensates have liquid-like material properties
title_sort in diverse conditions, intrinsic chromatin condensates have liquid-like material properties
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161002/
https://www.ncbi.nlm.nih.gov/pubmed/37094140
http://dx.doi.org/10.1073/pnas.2218085120
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