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SDU – software for high-throughput automated data collection at the Swiss Light Source

Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commis...

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Autores principales: Smith, Kate Mary Louise, Panepucci, Ezequiel, Kaminski, Jakub Wojciech, Aumonier, Sylvain, Huang, Chia-Yiang, Eris, Deniz, Buntschu, Dominik, Meier, Nathalie, Glettig, Wayne, McAuley, Katherine Evelyn, Wang, Meitian, Sharpe, May Elizabeth, Wojdyla, Justyna Aleksandra
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161886/
https://www.ncbi.nlm.nih.gov/pubmed/37042663
http://dx.doi.org/10.1107/S1600577523002631
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author Smith, Kate Mary Louise
Panepucci, Ezequiel
Kaminski, Jakub Wojciech
Aumonier, Sylvain
Huang, Chia-Yiang
Eris, Deniz
Buntschu, Dominik
Meier, Nathalie
Glettig, Wayne
McAuley, Katherine Evelyn
Wang, Meitian
Sharpe, May Elizabeth
Wojdyla, Justyna Aleksandra
author_facet Smith, Kate Mary Louise
Panepucci, Ezequiel
Kaminski, Jakub Wojciech
Aumonier, Sylvain
Huang, Chia-Yiang
Eris, Deniz
Buntschu, Dominik
Meier, Nathalie
Glettig, Wayne
McAuley, Katherine Evelyn
Wang, Meitian
Sharpe, May Elizabeth
Wojdyla, Justyna Aleksandra
author_sort Smith, Kate Mary Louise
collection PubMed
description Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commissioning of the Fast Fragment and Compound Screening pipeline created a unique opportunity to automate data acquisition. Here, the DA+ microservice software stack upgrades, implementation of an automatic loop-centering service and deployment of the Smart Digital User (SDU) software for unattended data collection are reported. The SDU software is the decision-making software responsible for communications between services, sample and device safety, sample centering, sample alignment with grid based X-ray diffraction and, finally, data collection.
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spelling pubmed-101618862023-05-06 SDU – software for high-throughput automated data collection at the Swiss Light Source Smith, Kate Mary Louise Panepucci, Ezequiel Kaminski, Jakub Wojciech Aumonier, Sylvain Huang, Chia-Yiang Eris, Deniz Buntschu, Dominik Meier, Nathalie Glettig, Wayne McAuley, Katherine Evelyn Wang, Meitian Sharpe, May Elizabeth Wojdyla, Justyna Aleksandra J Synchrotron Radiat Research Papers Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commissioning of the Fast Fragment and Compound Screening pipeline created a unique opportunity to automate data acquisition. Here, the DA+ microservice software stack upgrades, implementation of an automatic loop-centering service and deployment of the Smart Digital User (SDU) software for unattended data collection are reported. The SDU software is the decision-making software responsible for communications between services, sample and device safety, sample centering, sample alignment with grid based X-ray diffraction and, finally, data collection. International Union of Crystallography 2023-04-12 /pmc/articles/PMC10161886/ /pubmed/37042663 http://dx.doi.org/10.1107/S1600577523002631 Text en © Kate Mary Louise Smith et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Smith, Kate Mary Louise
Panepucci, Ezequiel
Kaminski, Jakub Wojciech
Aumonier, Sylvain
Huang, Chia-Yiang
Eris, Deniz
Buntschu, Dominik
Meier, Nathalie
Glettig, Wayne
McAuley, Katherine Evelyn
Wang, Meitian
Sharpe, May Elizabeth
Wojdyla, Justyna Aleksandra
SDU – software for high-throughput automated data collection at the Swiss Light Source
title SDU – software for high-throughput automated data collection at the Swiss Light Source
title_full SDU – software for high-throughput automated data collection at the Swiss Light Source
title_fullStr SDU – software for high-throughput automated data collection at the Swiss Light Source
title_full_unstemmed SDU – software for high-throughput automated data collection at the Swiss Light Source
title_short SDU – software for high-throughput automated data collection at the Swiss Light Source
title_sort sdu – software for high-throughput automated data collection at the swiss light source
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161886/
https://www.ncbi.nlm.nih.gov/pubmed/37042663
http://dx.doi.org/10.1107/S1600577523002631
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