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SDU – software for high-throughput automated data collection at the Swiss Light Source
Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commis...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161886/ https://www.ncbi.nlm.nih.gov/pubmed/37042663 http://dx.doi.org/10.1107/S1600577523002631 |
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author | Smith, Kate Mary Louise Panepucci, Ezequiel Kaminski, Jakub Wojciech Aumonier, Sylvain Huang, Chia-Yiang Eris, Deniz Buntschu, Dominik Meier, Nathalie Glettig, Wayne McAuley, Katherine Evelyn Wang, Meitian Sharpe, May Elizabeth Wojdyla, Justyna Aleksandra |
author_facet | Smith, Kate Mary Louise Panepucci, Ezequiel Kaminski, Jakub Wojciech Aumonier, Sylvain Huang, Chia-Yiang Eris, Deniz Buntschu, Dominik Meier, Nathalie Glettig, Wayne McAuley, Katherine Evelyn Wang, Meitian Sharpe, May Elizabeth Wojdyla, Justyna Aleksandra |
author_sort | Smith, Kate Mary Louise |
collection | PubMed |
description | Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commissioning of the Fast Fragment and Compound Screening pipeline created a unique opportunity to automate data acquisition. Here, the DA+ microservice software stack upgrades, implementation of an automatic loop-centering service and deployment of the Smart Digital User (SDU) software for unattended data collection are reported. The SDU software is the decision-making software responsible for communications between services, sample and device safety, sample centering, sample alignment with grid based X-ray diffraction and, finally, data collection. |
format | Online Article Text |
id | pubmed-10161886 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-101618862023-05-06 SDU – software for high-throughput automated data collection at the Swiss Light Source Smith, Kate Mary Louise Panepucci, Ezequiel Kaminski, Jakub Wojciech Aumonier, Sylvain Huang, Chia-Yiang Eris, Deniz Buntschu, Dominik Meier, Nathalie Glettig, Wayne McAuley, Katherine Evelyn Wang, Meitian Sharpe, May Elizabeth Wojdyla, Justyna Aleksandra J Synchrotron Radiat Research Papers Recent advances in automation have fostered the development of unattended data collection services at a handful of synchrotron facilities worldwide. At the Swiss Light Source, the installation of new high-throughput sample changers at all three macromolecular crystallography beamlines and the commissioning of the Fast Fragment and Compound Screening pipeline created a unique opportunity to automate data acquisition. Here, the DA+ microservice software stack upgrades, implementation of an automatic loop-centering service and deployment of the Smart Digital User (SDU) software for unattended data collection are reported. The SDU software is the decision-making software responsible for communications between services, sample and device safety, sample centering, sample alignment with grid based X-ray diffraction and, finally, data collection. International Union of Crystallography 2023-04-12 /pmc/articles/PMC10161886/ /pubmed/37042663 http://dx.doi.org/10.1107/S1600577523002631 Text en © Kate Mary Louise Smith et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Smith, Kate Mary Louise Panepucci, Ezequiel Kaminski, Jakub Wojciech Aumonier, Sylvain Huang, Chia-Yiang Eris, Deniz Buntschu, Dominik Meier, Nathalie Glettig, Wayne McAuley, Katherine Evelyn Wang, Meitian Sharpe, May Elizabeth Wojdyla, Justyna Aleksandra SDU – software for high-throughput automated data collection at the Swiss Light Source |
title | SDU – software for high-throughput automated data collection at the Swiss Light Source |
title_full | SDU – software for high-throughput automated data collection at the Swiss Light Source |
title_fullStr | SDU – software for high-throughput automated data collection at the Swiss Light Source |
title_full_unstemmed | SDU – software for high-throughput automated data collection at the Swiss Light Source |
title_short | SDU – software for high-throughput automated data collection at the Swiss Light Source |
title_sort | sdu – software for high-throughput automated data collection at the swiss light source |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161886/ https://www.ncbi.nlm.nih.gov/pubmed/37042663 http://dx.doi.org/10.1107/S1600577523002631 |
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