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darfix – data analysis for dark-field X-ray microscopy

A Python package for the analysis of dark-field X-ray microscopy (DFXM) and rocking curve imaging (RCI) data is presented. DFXM is a non-destructive diffraction imaging technique that provides three-dimensional maps of lattice strain and orientation. The darfix package enables fast processing and vi...

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Autores principales: Garriga Ferrer, Júlia, Rodríguez-Lamas, Raquel, Payno, Henri, De Nolf, Wout, Cook, Phil, Solé Jover, Vicente Armando, Yildirim, Can, Detlefs, Carsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161887/
https://www.ncbi.nlm.nih.gov/pubmed/37000183
http://dx.doi.org/10.1107/S1600577523001674
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author Garriga Ferrer, Júlia
Rodríguez-Lamas, Raquel
Payno, Henri
De Nolf, Wout
Cook, Phil
Solé Jover, Vicente Armando
Yildirim, Can
Detlefs, Carsten
author_facet Garriga Ferrer, Júlia
Rodríguez-Lamas, Raquel
Payno, Henri
De Nolf, Wout
Cook, Phil
Solé Jover, Vicente Armando
Yildirim, Can
Detlefs, Carsten
author_sort Garriga Ferrer, Júlia
collection PubMed
description A Python package for the analysis of dark-field X-ray microscopy (DFXM) and rocking curve imaging (RCI) data is presented. DFXM is a non-destructive diffraction imaging technique that provides three-dimensional maps of lattice strain and orientation. The darfix package enables fast processing and visualization of these data, providing the user with the essential tools to extract information from the acquired images in a fast and intuitive manner. These data processing and visualization tools can be either imported as library components or accessed through a graphical user interface as an Orange add-on. In the latter case, the different analysis modules can be easily chained to define computational workflows. Operations on larger-than-memory image sets are supported through the implementation of online versions of the data processing algorithms, effectively trading performance for feasibility when the computing resources are limited. The software can automatically extract the relevant instrument angle settings from the input files’ metadata. The currently available input file format is EDF and in future releases HDF5 will be incorporated.
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spelling pubmed-101618872023-05-06 darfix – data analysis for dark-field X-ray microscopy Garriga Ferrer, Júlia Rodríguez-Lamas, Raquel Payno, Henri De Nolf, Wout Cook, Phil Solé Jover, Vicente Armando Yildirim, Can Detlefs, Carsten J Synchrotron Radiat Research Papers A Python package for the analysis of dark-field X-ray microscopy (DFXM) and rocking curve imaging (RCI) data is presented. DFXM is a non-destructive diffraction imaging technique that provides three-dimensional maps of lattice strain and orientation. The darfix package enables fast processing and visualization of these data, providing the user with the essential tools to extract information from the acquired images in a fast and intuitive manner. These data processing and visualization tools can be either imported as library components or accessed through a graphical user interface as an Orange add-on. In the latter case, the different analysis modules can be easily chained to define computational workflows. Operations on larger-than-memory image sets are supported through the implementation of online versions of the data processing algorithms, effectively trading performance for feasibility when the computing resources are limited. The software can automatically extract the relevant instrument angle settings from the input files’ metadata. The currently available input file format is EDF and in future releases HDF5 will be incorporated. International Union of Crystallography 2023-03-31 /pmc/articles/PMC10161887/ /pubmed/37000183 http://dx.doi.org/10.1107/S1600577523001674 Text en © Júlia Garriga Ferrer et al. 2023 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
spellingShingle Research Papers
Garriga Ferrer, Júlia
Rodríguez-Lamas, Raquel
Payno, Henri
De Nolf, Wout
Cook, Phil
Solé Jover, Vicente Armando
Yildirim, Can
Detlefs, Carsten
darfix – data analysis for dark-field X-ray microscopy
title darfix – data analysis for dark-field X-ray microscopy
title_full darfix – data analysis for dark-field X-ray microscopy
title_fullStr darfix – data analysis for dark-field X-ray microscopy
title_full_unstemmed darfix – data analysis for dark-field X-ray microscopy
title_short darfix – data analysis for dark-field X-ray microscopy
title_sort darfix – data analysis for dark-field x-ray microscopy
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10161887/
https://www.ncbi.nlm.nih.gov/pubmed/37000183
http://dx.doi.org/10.1107/S1600577523001674
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