Cargando…
Better null models for assessing predictive accuracy of disease models
Null models provide a critical baseline for the evaluation of predictive disease models. Many studies consider only the grand mean null model (i.e. R(2)) when evaluating the predictive ability of a model, which is insufficient to convey the predictive power of a model. We evaluated ten null models f...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10162537/ https://www.ncbi.nlm.nih.gov/pubmed/37146010 http://dx.doi.org/10.1371/journal.pone.0285215 |
_version_ | 1785037715318767616 |
---|---|
author | Keyel, Alexander C. Kilpatrick, A. Marm |
author_facet | Keyel, Alexander C. Kilpatrick, A. Marm |
author_sort | Keyel, Alexander C. |
collection | PubMed |
description | Null models provide a critical baseline for the evaluation of predictive disease models. Many studies consider only the grand mean null model (i.e. R(2)) when evaluating the predictive ability of a model, which is insufficient to convey the predictive power of a model. We evaluated ten null models for human cases of West Nile virus (WNV), a zoonotic mosquito-borne disease introduced to the United States in 1999. The Negative Binomial, Historical (i.e. using previous cases to predict future cases) and Always Absent null models were the strongest overall, and the majority of null models significantly outperformed the grand mean. The length of the training timeseries increased the performance of most null models in US counties where WNV cases were frequent, but improvements were similar for most null models, so relative scores remained unchanged. We argue that a combination of null models is needed to evaluate the forecasting performance of predictive models for infectious diseases and the grand mean is the lowest bar. |
format | Online Article Text |
id | pubmed-10162537 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-101625372023-05-06 Better null models for assessing predictive accuracy of disease models Keyel, Alexander C. Kilpatrick, A. Marm PLoS One Research Article Null models provide a critical baseline for the evaluation of predictive disease models. Many studies consider only the grand mean null model (i.e. R(2)) when evaluating the predictive ability of a model, which is insufficient to convey the predictive power of a model. We evaluated ten null models for human cases of West Nile virus (WNV), a zoonotic mosquito-borne disease introduced to the United States in 1999. The Negative Binomial, Historical (i.e. using previous cases to predict future cases) and Always Absent null models were the strongest overall, and the majority of null models significantly outperformed the grand mean. The length of the training timeseries increased the performance of most null models in US counties where WNV cases were frequent, but improvements were similar for most null models, so relative scores remained unchanged. We argue that a combination of null models is needed to evaluate the forecasting performance of predictive models for infectious diseases and the grand mean is the lowest bar. Public Library of Science 2023-05-05 /pmc/articles/PMC10162537/ /pubmed/37146010 http://dx.doi.org/10.1371/journal.pone.0285215 Text en © 2023 Keyel, Kilpatrick https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Keyel, Alexander C. Kilpatrick, A. Marm Better null models for assessing predictive accuracy of disease models |
title | Better null models for assessing predictive accuracy of disease models |
title_full | Better null models for assessing predictive accuracy of disease models |
title_fullStr | Better null models for assessing predictive accuracy of disease models |
title_full_unstemmed | Better null models for assessing predictive accuracy of disease models |
title_short | Better null models for assessing predictive accuracy of disease models |
title_sort | better null models for assessing predictive accuracy of disease models |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10162537/ https://www.ncbi.nlm.nih.gov/pubmed/37146010 http://dx.doi.org/10.1371/journal.pone.0285215 |
work_keys_str_mv | AT keyelalexanderc betternullmodelsforassessingpredictiveaccuracyofdiseasemodels AT kilpatrickamarm betternullmodelsforassessingpredictiveaccuracyofdiseasemodels |