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Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis

Colon cancer (CC) has a poor 5-year survival rate though the treatment techniques and strategies have been improved. Succinylation and long noncoding RNAs (lncRNAs) have prognostic value for CC patients. We analyzed and obtained succinylation-related lncRNA by co-expression in CC. A novel succinylat...

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Autores principales: Zhang, Si-ming, Shen, Cheng, Gu, Jue, Li, Jing, Jiang, Xiaohui, Wu, Zhijun, Shen, Aiguo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163232/
https://www.ncbi.nlm.nih.gov/pubmed/37147453
http://dx.doi.org/10.1038/s41598-023-34503-2
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author Zhang, Si-ming
Shen, Cheng
Gu, Jue
Li, Jing
Jiang, Xiaohui
Wu, Zhijun
Shen, Aiguo
author_facet Zhang, Si-ming
Shen, Cheng
Gu, Jue
Li, Jing
Jiang, Xiaohui
Wu, Zhijun
Shen, Aiguo
author_sort Zhang, Si-ming
collection PubMed
description Colon cancer (CC) has a poor 5-year survival rate though the treatment techniques and strategies have been improved. Succinylation and long noncoding RNAs (lncRNAs) have prognostic value for CC patients. We analyzed and obtained succinylation-related lncRNA by co-expression in CC. A novel succinylation-related lncRNA model was developed by univariate and Least absolute shrinkage and selection operator (Lasso) regression analysis and we used principal component analysis (PCA), functional enrichment annotation, tumor immune environment, drug sensitivity and nomogram to verify the model, respectively. Six succinylation-related lncRNAs in our model were finally confirmed to distinguish the survival status of CC and showed statistically significant differences in training set, testing set, and entire set. The prognosis of with this model was associated with age, gender, M0 stage, N2 stage, T3 + T4 stage and Stage III + IV. The high-risk group showed a higher mutation rate than the low-risk group. We constructed a model to predict overall survival for 1-, 3-, and 5-year with AUCs of 0.694, 0.729, and 0.802, respectively. The high-risk group was sensitive to Cisplatin and Temozolomide compounds. Our study provided novel insights into the value of the succinylation-related lncRNA signature as a predictor of prognosis, which had high clinical application value in the future.
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spelling pubmed-101632322023-05-07 Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis Zhang, Si-ming Shen, Cheng Gu, Jue Li, Jing Jiang, Xiaohui Wu, Zhijun Shen, Aiguo Sci Rep Article Colon cancer (CC) has a poor 5-year survival rate though the treatment techniques and strategies have been improved. Succinylation and long noncoding RNAs (lncRNAs) have prognostic value for CC patients. We analyzed and obtained succinylation-related lncRNA by co-expression in CC. A novel succinylation-related lncRNA model was developed by univariate and Least absolute shrinkage and selection operator (Lasso) regression analysis and we used principal component analysis (PCA), functional enrichment annotation, tumor immune environment, drug sensitivity and nomogram to verify the model, respectively. Six succinylation-related lncRNAs in our model were finally confirmed to distinguish the survival status of CC and showed statistically significant differences in training set, testing set, and entire set. The prognosis of with this model was associated with age, gender, M0 stage, N2 stage, T3 + T4 stage and Stage III + IV. The high-risk group showed a higher mutation rate than the low-risk group. We constructed a model to predict overall survival for 1-, 3-, and 5-year with AUCs of 0.694, 0.729, and 0.802, respectively. The high-risk group was sensitive to Cisplatin and Temozolomide compounds. Our study provided novel insights into the value of the succinylation-related lncRNA signature as a predictor of prognosis, which had high clinical application value in the future. Nature Publishing Group UK 2023-05-05 /pmc/articles/PMC10163232/ /pubmed/37147453 http://dx.doi.org/10.1038/s41598-023-34503-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Zhang, Si-ming
Shen, Cheng
Gu, Jue
Li, Jing
Jiang, Xiaohui
Wu, Zhijun
Shen, Aiguo
Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title_full Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title_fullStr Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title_full_unstemmed Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title_short Succinylation-associated lncRNA signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
title_sort succinylation-associated lncrna signature to predict the prognosis of colon cancer based on integrative bioinformatics analysis
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163232/
https://www.ncbi.nlm.nih.gov/pubmed/37147453
http://dx.doi.org/10.1038/s41598-023-34503-2
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