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Denoising diffusion probabilistic models for 3D medical image generation
Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen, and Stable Diffusion. However, their use in medicine, where imaging data typically comprises th...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163245/ https://www.ncbi.nlm.nih.gov/pubmed/37147413 http://dx.doi.org/10.1038/s41598-023-34341-2 |
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author | Khader, Firas Müller-Franzes, Gustav Tayebi Arasteh, Soroosh Han, Tianyu Haarburger, Christoph Schulze-Hagen, Maximilian Schad, Philipp Engelhardt, Sandy Baeßler, Bettina Foersch, Sebastian Stegmaier, Johannes Kuhl, Christiane Nebelung, Sven Kather, Jakob Nikolas Truhn, Daniel |
author_facet | Khader, Firas Müller-Franzes, Gustav Tayebi Arasteh, Soroosh Han, Tianyu Haarburger, Christoph Schulze-Hagen, Maximilian Schad, Philipp Engelhardt, Sandy Baeßler, Bettina Foersch, Sebastian Stegmaier, Johannes Kuhl, Christiane Nebelung, Sven Kather, Jakob Nikolas Truhn, Daniel |
author_sort | Khader, Firas |
collection | PubMed |
description | Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen, and Stable Diffusion. However, their use in medicine, where imaging data typically comprises three-dimensional volumes, has not been systematically evaluated. Synthetic images may play a crucial role in privacy-preserving artificial intelligence and can also be used to augment small datasets. We show that diffusion probabilistic models can synthesize high-quality medical data for magnetic resonance imaging (MRI) and computed tomography (CT). For quantitative evaluation, two radiologists rated the quality of the synthesized images regarding "realistic image appearance", "anatomical correctness", and "consistency between slices". Furthermore, we demonstrate that synthetic images can be used in self-supervised pre-training and improve the performance of breast segmentation models when data is scarce (Dice scores, 0.91 [without synthetic data], 0.95 [with synthetic data]). |
format | Online Article Text |
id | pubmed-10163245 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101632452023-05-07 Denoising diffusion probabilistic models for 3D medical image generation Khader, Firas Müller-Franzes, Gustav Tayebi Arasteh, Soroosh Han, Tianyu Haarburger, Christoph Schulze-Hagen, Maximilian Schad, Philipp Engelhardt, Sandy Baeßler, Bettina Foersch, Sebastian Stegmaier, Johannes Kuhl, Christiane Nebelung, Sven Kather, Jakob Nikolas Truhn, Daniel Sci Rep Article Recent advances in computer vision have shown promising results in image generation. Diffusion probabilistic models have generated realistic images from textual input, as demonstrated by DALL-E 2, Imagen, and Stable Diffusion. However, their use in medicine, where imaging data typically comprises three-dimensional volumes, has not been systematically evaluated. Synthetic images may play a crucial role in privacy-preserving artificial intelligence and can also be used to augment small datasets. We show that diffusion probabilistic models can synthesize high-quality medical data for magnetic resonance imaging (MRI) and computed tomography (CT). For quantitative evaluation, two radiologists rated the quality of the synthesized images regarding "realistic image appearance", "anatomical correctness", and "consistency between slices". Furthermore, we demonstrate that synthetic images can be used in self-supervised pre-training and improve the performance of breast segmentation models when data is scarce (Dice scores, 0.91 [without synthetic data], 0.95 [with synthetic data]). Nature Publishing Group UK 2023-05-05 /pmc/articles/PMC10163245/ /pubmed/37147413 http://dx.doi.org/10.1038/s41598-023-34341-2 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Khader, Firas Müller-Franzes, Gustav Tayebi Arasteh, Soroosh Han, Tianyu Haarburger, Christoph Schulze-Hagen, Maximilian Schad, Philipp Engelhardt, Sandy Baeßler, Bettina Foersch, Sebastian Stegmaier, Johannes Kuhl, Christiane Nebelung, Sven Kather, Jakob Nikolas Truhn, Daniel Denoising diffusion probabilistic models for 3D medical image generation |
title | Denoising diffusion probabilistic models for 3D medical image generation |
title_full | Denoising diffusion probabilistic models for 3D medical image generation |
title_fullStr | Denoising diffusion probabilistic models for 3D medical image generation |
title_full_unstemmed | Denoising diffusion probabilistic models for 3D medical image generation |
title_short | Denoising diffusion probabilistic models for 3D medical image generation |
title_sort | denoising diffusion probabilistic models for 3d medical image generation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163245/ https://www.ncbi.nlm.nih.gov/pubmed/37147413 http://dx.doi.org/10.1038/s41598-023-34341-2 |
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