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Reconstructing the pressure field around swimming fish using a physics-informed neural network
Fish detect predators, flow conditions, environments and each other through pressure signals. Lateral line ablation is often performed to understand the role of pressure sensing. In the present study, we propose a non-invasive method for reconstructing the instantaneous pressure field sensed by a fi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Company of Biologists Ltd
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163353/ https://www.ncbi.nlm.nih.gov/pubmed/37066991 http://dx.doi.org/10.1242/jeb.244983 |
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author | Calicchia, Michael A. Mittal, Rajat Seo, Jung-Hee Ni, Rui |
author_facet | Calicchia, Michael A. Mittal, Rajat Seo, Jung-Hee Ni, Rui |
author_sort | Calicchia, Michael A. |
collection | PubMed |
description | Fish detect predators, flow conditions, environments and each other through pressure signals. Lateral line ablation is often performed to understand the role of pressure sensing. In the present study, we propose a non-invasive method for reconstructing the instantaneous pressure field sensed by a fish's lateral line system from two-dimensional particle image velocimetry (PIV) measurements. The method uses a physics-informed neural network (PINN) to predict an optimized solution for the pressure field near and on the fish's body that satisfies both the Navier–Stokes equations and the constraints put forward by the PIV measurements. The method was validated using a direct numerical simulation of a swimming mackerel, Scomber scombrus, and was applied to experimental data of a turning zebrafish, Danio rerio. The results demonstrate that this method is relatively insensitive to the spatio-temporal resolution of the PIV measurements and accurately reconstructs the pressure on the fish's body. |
format | Online Article Text |
id | pubmed-10163353 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | The Company of Biologists Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-101633532023-05-07 Reconstructing the pressure field around swimming fish using a physics-informed neural network Calicchia, Michael A. Mittal, Rajat Seo, Jung-Hee Ni, Rui J Exp Biol Methods & Techniques Fish detect predators, flow conditions, environments and each other through pressure signals. Lateral line ablation is often performed to understand the role of pressure sensing. In the present study, we propose a non-invasive method for reconstructing the instantaneous pressure field sensed by a fish's lateral line system from two-dimensional particle image velocimetry (PIV) measurements. The method uses a physics-informed neural network (PINN) to predict an optimized solution for the pressure field near and on the fish's body that satisfies both the Navier–Stokes equations and the constraints put forward by the PIV measurements. The method was validated using a direct numerical simulation of a swimming mackerel, Scomber scombrus, and was applied to experimental data of a turning zebrafish, Danio rerio. The results demonstrate that this method is relatively insensitive to the spatio-temporal resolution of the PIV measurements and accurately reconstructs the pressure on the fish's body. The Company of Biologists Ltd 2023-04-27 /pmc/articles/PMC10163353/ /pubmed/37066991 http://dx.doi.org/10.1242/jeb.244983 Text en © 2023. Published by The Company of Biologists Ltd https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution and reproduction in any medium provided that the original work is properly attributed. |
spellingShingle | Methods & Techniques Calicchia, Michael A. Mittal, Rajat Seo, Jung-Hee Ni, Rui Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title | Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title_full | Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title_fullStr | Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title_full_unstemmed | Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title_short | Reconstructing the pressure field around swimming fish using a physics-informed neural network |
title_sort | reconstructing the pressure field around swimming fish using a physics-informed neural network |
topic | Methods & Techniques |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163353/ https://www.ncbi.nlm.nih.gov/pubmed/37066991 http://dx.doi.org/10.1242/jeb.244983 |
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