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A machine learning and explainable artificial intelligence triage-prediction system for COVID-19

COVID-19 is a respiratory disease caused by the SARS-CoV-2 contagion, severely disrupted the healthcare infrastructure. Various countries have developed COVID-19 vaccines that have effectively prevented the severe symptoms caused by the virus to a certain extent. However, a small section of people c...

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Detalles Bibliográficos
Autores principales: Khanna, Varada Vivek, Chadaga, Krishnaraj, Sampathila, Niranjana, Prabhu, Srikanth, P., Rajagopala Chadaga
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Author(s). Published by Elsevier Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163946/
http://dx.doi.org/10.1016/j.dajour.2023.100246
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author Khanna, Varada Vivek
Chadaga, Krishnaraj
Sampathila, Niranjana
Prabhu, Srikanth
P., Rajagopala Chadaga
author_facet Khanna, Varada Vivek
Chadaga, Krishnaraj
Sampathila, Niranjana
Prabhu, Srikanth
P., Rajagopala Chadaga
author_sort Khanna, Varada Vivek
collection PubMed
description COVID-19 is a respiratory disease caused by the SARS-CoV-2 contagion, severely disrupted the healthcare infrastructure. Various countries have developed COVID-19 vaccines that have effectively prevented the severe symptoms caused by the virus to a certain extent. However, a small section of people continues to perish. Artificial intelligence advances have revolutionized healthcare diagnosis and prognosis infrastructure. In this study, we predict the severity of COVID-19 using heterogenous Machine Learning and Deep Learning algorithms by considering clinical markers, vital signs, and other critical factors. This study extensively reviews various classifier architectures to predict the COVID-19 severity. We built and evaluated multiple pipelines entailing combinations of five state-of-the-art data-balancing techniques (Synthetic Minority Oversampling Technique (SMOTE), Adaptive Synthetic, Borderline SMOTE, SMOTE with Tomek links, and SMOTE with Edited Nearest Neighbor (ENN)) and twelve heterogeneous classifiers such as Logistic Regression, Decision Tree, Random Forest, Support Vector Machine, K-Nearest Neighbors, Naïve Bayes, Xgboost, Extratrees, Adaboost, Light GBM, Catboost, and 1-D Convolution Neural Network. The best-performing pipeline consists of Random Forest trained on Borderline SMOTE balanced data that produced the highest recall of 83%. We deployed Explainable Artificial Intelligence tools such as Shapley Additive Explanations and Local Interpretable Model-agnostic Explanations, ELI5, Qlattice, Anchor, and Feature Importance to demystify complex tree-based ensemble models. These tools provide valuable insights into the significance of critical features in the severity prediction of a COVID-19 patient. It was observed that changes in respiratory rate, blood pressure, lactate, and calcium values were the primary contributors to the increase in severity of a COVID-19 patient. This architecture aims to be an explainable decision-support triaging system for medical professionals in countries lacking advanced medical technology and infrastructure to reduce fatalities.
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spelling pubmed-101639462023-05-08 A machine learning and explainable artificial intelligence triage-prediction system for COVID-19 Khanna, Varada Vivek Chadaga, Krishnaraj Sampathila, Niranjana Prabhu, Srikanth P., Rajagopala Chadaga Decision Analytics Journal Article COVID-19 is a respiratory disease caused by the SARS-CoV-2 contagion, severely disrupted the healthcare infrastructure. Various countries have developed COVID-19 vaccines that have effectively prevented the severe symptoms caused by the virus to a certain extent. However, a small section of people continues to perish. Artificial intelligence advances have revolutionized healthcare diagnosis and prognosis infrastructure. In this study, we predict the severity of COVID-19 using heterogenous Machine Learning and Deep Learning algorithms by considering clinical markers, vital signs, and other critical factors. This study extensively reviews various classifier architectures to predict the COVID-19 severity. We built and evaluated multiple pipelines entailing combinations of five state-of-the-art data-balancing techniques (Synthetic Minority Oversampling Technique (SMOTE), Adaptive Synthetic, Borderline SMOTE, SMOTE with Tomek links, and SMOTE with Edited Nearest Neighbor (ENN)) and twelve heterogeneous classifiers such as Logistic Regression, Decision Tree, Random Forest, Support Vector Machine, K-Nearest Neighbors, Naïve Bayes, Xgboost, Extratrees, Adaboost, Light GBM, Catboost, and 1-D Convolution Neural Network. The best-performing pipeline consists of Random Forest trained on Borderline SMOTE balanced data that produced the highest recall of 83%. We deployed Explainable Artificial Intelligence tools such as Shapley Additive Explanations and Local Interpretable Model-agnostic Explanations, ELI5, Qlattice, Anchor, and Feature Importance to demystify complex tree-based ensemble models. These tools provide valuable insights into the significance of critical features in the severity prediction of a COVID-19 patient. It was observed that changes in respiratory rate, blood pressure, lactate, and calcium values were the primary contributors to the increase in severity of a COVID-19 patient. This architecture aims to be an explainable decision-support triaging system for medical professionals in countries lacking advanced medical technology and infrastructure to reduce fatalities. The Author(s). Published by Elsevier Inc. 2023-06 2023-05-06 /pmc/articles/PMC10163946/ http://dx.doi.org/10.1016/j.dajour.2023.100246 Text en © 2023 The Author(s) Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Khanna, Varada Vivek
Chadaga, Krishnaraj
Sampathila, Niranjana
Prabhu, Srikanth
P., Rajagopala Chadaga
A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title_full A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title_fullStr A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title_full_unstemmed A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title_short A machine learning and explainable artificial intelligence triage-prediction system for COVID-19
title_sort machine learning and explainable artificial intelligence triage-prediction system for covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10163946/
http://dx.doi.org/10.1016/j.dajour.2023.100246
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