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Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China

The coronavirus disease 2019 (COVID-19) continues to have a huge impact on health care and economic systems around the world. The first question to ponder is to understand the flow of COVID-19 in the spatial and temporal dimensions. We collected 7 Omicron clusters outbreaks in China since the outbre...

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Autores principales: Wei, Hongjie, Rui, Jia, Zhao, Yunkang, Qu, Huimin, Wang, Jing, Abudurusuli, Guzainuer, Chen, Qiuping, Zhao, Zeyu, Song, Wentao, Wang, Yao, Frutos, Roger, Chen, Tianmu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Authors. Publishing Services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10164289/
http://dx.doi.org/10.1016/j.fmre.2023.03.014
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author Wei, Hongjie
Rui, Jia
Zhao, Yunkang
Qu, Huimin
Wang, Jing
Abudurusuli, Guzainuer
Chen, Qiuping
Zhao, Zeyu
Song, Wentao
Wang, Yao
Frutos, Roger
Chen, Tianmu
author_facet Wei, Hongjie
Rui, Jia
Zhao, Yunkang
Qu, Huimin
Wang, Jing
Abudurusuli, Guzainuer
Chen, Qiuping
Zhao, Zeyu
Song, Wentao
Wang, Yao
Frutos, Roger
Chen, Tianmu
author_sort Wei, Hongjie
collection PubMed
description The coronavirus disease 2019 (COVID-19) continues to have a huge impact on health care and economic systems around the world. The first question to ponder is to understand the flow of COVID-19 in the spatial and temporal dimensions. We collected 7 Omicron clusters outbreaks in China since the outbreak of COVID-19 as of August 2022, selected outbreak cases from different Provinces and cities, and collected variable indicators that affect spillover outcomes, such as distance, migration index, PHSM index, daily reported cases number and so on. First, variables influencing spillover outcome events were assessed and analyzed retrospectively by constructing an infectious disease dynamics model and a classifier model, and secondly, the association between explanatory variables and spillover outcome events was constructed by fitting a logistics function. This study incorporates 7 influencing factors and classifies the spillover risk level into 3 levels. If different outbreak sites could be classified into different levels of spillover, it may reduce the pressure of epidemic prevention in some cities due to the lack of a uniform standard, which might be more conducive to achieving the goal of "dynamic zero".
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spelling pubmed-101642892023-05-08 Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China Wei, Hongjie Rui, Jia Zhao, Yunkang Qu, Huimin Wang, Jing Abudurusuli, Guzainuer Chen, Qiuping Zhao, Zeyu Song, Wentao Wang, Yao Frutos, Roger Chen, Tianmu Fundamental Research Article The coronavirus disease 2019 (COVID-19) continues to have a huge impact on health care and economic systems around the world. The first question to ponder is to understand the flow of COVID-19 in the spatial and temporal dimensions. We collected 7 Omicron clusters outbreaks in China since the outbreak of COVID-19 as of August 2022, selected outbreak cases from different Provinces and cities, and collected variable indicators that affect spillover outcomes, such as distance, migration index, PHSM index, daily reported cases number and so on. First, variables influencing spillover outcome events were assessed and analyzed retrospectively by constructing an infectious disease dynamics model and a classifier model, and secondly, the association between explanatory variables and spillover outcome events was constructed by fitting a logistics function. This study incorporates 7 influencing factors and classifies the spillover risk level into 3 levels. If different outbreak sites could be classified into different levels of spillover, it may reduce the pressure of epidemic prevention in some cities due to the lack of a uniform standard, which might be more conducive to achieving the goal of "dynamic zero". The Authors. Publishing Services by Elsevier B.V. on behalf of KeAi Communications Co. Ltd. 2023-05-07 /pmc/articles/PMC10164289/ http://dx.doi.org/10.1016/j.fmre.2023.03.014 Text en © 2023 The Authors Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Wei, Hongjie
Rui, Jia
Zhao, Yunkang
Qu, Huimin
Wang, Jing
Abudurusuli, Guzainuer
Chen, Qiuping
Zhao, Zeyu
Song, Wentao
Wang, Yao
Frutos, Roger
Chen, Tianmu
Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title_full Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title_fullStr Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title_full_unstemmed Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title_short Dynamic and classifier-based model SARS-CoV-2 Omicron spillover risk assessment in China
title_sort dynamic and classifier-based model sars-cov-2 omicron spillover risk assessment in china
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10164289/
http://dx.doi.org/10.1016/j.fmre.2023.03.014
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