TRviz: a Python library for decomposing and visualizing tandem repeat sequences

SUMMARY: TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. AVAI...

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Detalles Bibliográficos
Autores principales: Park, Jonghun, Kaufman, Eli, Valdmanis, Paul N, Bafna, Vineet
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Application Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10166586/
https://www.ncbi.nlm.nih.gov/pubmed/37168281
http://dx.doi.org/10.1093/bioadv/vbad058
Descripción
Sumario:SUMMARY: TRviz is an open-source Python library for decomposing, encoding, aligning and visualizing tandem repeat (TR) sequences. TRviz takes a collection of alleles (TR containing sequences) and one or more motifs as input and generates a plot showing the motif composition of the TR sequences. AVAILABILITY AND IMPLEMENTATION: TRviz is an open-source Python library and freely available at https://github.com/Jong-hun-Park/trviz. Detailed documentation is available at https://trviz.readthedocs.io. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics Advances online.

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