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Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker p...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10166923/ https://www.ncbi.nlm.nih.gov/pubmed/36776001 http://dx.doi.org/10.1002/cam4.5682 |
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author | Tong, Zhi Wang, Xinyu Shi, Sanbao Hou, Tiewei Gao, Guangrong Li, Da Shan, Yongqi Zhang, Cheng |
author_facet | Tong, Zhi Wang, Xinyu Shi, Sanbao Hou, Tiewei Gao, Guangrong Li, Da Shan, Yongqi Zhang, Cheng |
author_sort | Tong, Zhi |
collection | PubMed |
description | BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker potential of lactate‐related genes (LRGs) in CRC patients remain to be elucidated. METHODS: We collected the mRNA expression profile and clinical data of CRC patients from the Cancer Genome Atlas (TCGA) database and the GSE59382 cohort. Univariate Cox regression, Lasso regression and multivariate Cox regression analysis were used to construct the prognosis model. Combined with the risk score and important clinicopathological features, the nomogram was established. In addition, the relationship between risk score and immune infiltration, immune checkpoint gene expression, and drug sensitivity was investigated. RESULTS: We constructed lactate‐related gene signatures (LRGS) based on four LRGs, which independently predicted the prognosis of CRC. Patients with different risk scores are found to have distinct immune status, tumor mutation load, immune response, and drug sensitivity. In addition, nomogram results determined by risk scores and clinical factors have higher predictive performance. CONCLUSION: We found that LRGS is a reliable biomarker for predicting clinical outcomes, evaluating immune infiltration and efficacy, and predicting the sensitivity to drugs in patients with CRC. |
format | Online Article Text |
id | pubmed-10166923 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101669232023-05-10 Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer Tong, Zhi Wang, Xinyu Shi, Sanbao Hou, Tiewei Gao, Guangrong Li, Da Shan, Yongqi Zhang, Cheng Cancer Med Research Articles BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker potential of lactate‐related genes (LRGs) in CRC patients remain to be elucidated. METHODS: We collected the mRNA expression profile and clinical data of CRC patients from the Cancer Genome Atlas (TCGA) database and the GSE59382 cohort. Univariate Cox regression, Lasso regression and multivariate Cox regression analysis were used to construct the prognosis model. Combined with the risk score and important clinicopathological features, the nomogram was established. In addition, the relationship between risk score and immune infiltration, immune checkpoint gene expression, and drug sensitivity was investigated. RESULTS: We constructed lactate‐related gene signatures (LRGS) based on four LRGs, which independently predicted the prognosis of CRC. Patients with different risk scores are found to have distinct immune status, tumor mutation load, immune response, and drug sensitivity. In addition, nomogram results determined by risk scores and clinical factors have higher predictive performance. CONCLUSION: We found that LRGS is a reliable biomarker for predicting clinical outcomes, evaluating immune infiltration and efficacy, and predicting the sensitivity to drugs in patients with CRC. John Wiley and Sons Inc. 2023-02-12 /pmc/articles/PMC10166923/ /pubmed/36776001 http://dx.doi.org/10.1002/cam4.5682 Text en © 2023 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Tong, Zhi Wang, Xinyu Shi, Sanbao Hou, Tiewei Gao, Guangrong Li, Da Shan, Yongqi Zhang, Cheng Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title | Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title_full | Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title_fullStr | Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title_full_unstemmed | Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title_short | Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
title_sort | development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10166923/ https://www.ncbi.nlm.nih.gov/pubmed/36776001 http://dx.doi.org/10.1002/cam4.5682 |
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