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Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer

BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker p...

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Autores principales: Tong, Zhi, Wang, Xinyu, Shi, Sanbao, Hou, Tiewei, Gao, Guangrong, Li, Da, Shan, Yongqi, Zhang, Cheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10166923/
https://www.ncbi.nlm.nih.gov/pubmed/36776001
http://dx.doi.org/10.1002/cam4.5682
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author Tong, Zhi
Wang, Xinyu
Shi, Sanbao
Hou, Tiewei
Gao, Guangrong
Li, Da
Shan, Yongqi
Zhang, Cheng
author_facet Tong, Zhi
Wang, Xinyu
Shi, Sanbao
Hou, Tiewei
Gao, Guangrong
Li, Da
Shan, Yongqi
Zhang, Cheng
author_sort Tong, Zhi
collection PubMed
description BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker potential of lactate‐related genes (LRGs) in CRC patients remain to be elucidated. METHODS: We collected the mRNA expression profile and clinical data of CRC patients from the Cancer Genome Atlas (TCGA) database and the GSE59382 cohort. Univariate Cox regression, Lasso regression and multivariate Cox regression analysis were used to construct the prognosis model. Combined with the risk score and important clinicopathological features, the nomogram was established. In addition, the relationship between risk score and immune infiltration, immune checkpoint gene expression, and drug sensitivity was investigated. RESULTS: We constructed lactate‐related gene signatures (LRGS) based on four LRGs, which independently predicted the prognosis of CRC. Patients with different risk scores are found to have distinct immune status, tumor mutation load, immune response, and drug sensitivity. In addition, nomogram results determined by risk scores and clinical factors have higher predictive performance. CONCLUSION: We found that LRGS is a reliable biomarker for predicting clinical outcomes, evaluating immune infiltration and efficacy, and predicting the sensitivity to drugs in patients with CRC.
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spelling pubmed-101669232023-05-10 Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer Tong, Zhi Wang, Xinyu Shi, Sanbao Hou, Tiewei Gao, Guangrong Li, Da Shan, Yongqi Zhang, Cheng Cancer Med Research Articles BACKGROUND: Colorectal cancer (CRC) is a malignant tumor of the digestive system that contains high levels of immune cells. Lactic acid, a major metabolite, plays a crucial role in tumor development, maintenance, and therapeutic response. However, the prognostic potential and therapeutic biomarker potential of lactate‐related genes (LRGs) in CRC patients remain to be elucidated. METHODS: We collected the mRNA expression profile and clinical data of CRC patients from the Cancer Genome Atlas (TCGA) database and the GSE59382 cohort. Univariate Cox regression, Lasso regression and multivariate Cox regression analysis were used to construct the prognosis model. Combined with the risk score and important clinicopathological features, the nomogram was established. In addition, the relationship between risk score and immune infiltration, immune checkpoint gene expression, and drug sensitivity was investigated. RESULTS: We constructed lactate‐related gene signatures (LRGS) based on four LRGs, which independently predicted the prognosis of CRC. Patients with different risk scores are found to have distinct immune status, tumor mutation load, immune response, and drug sensitivity. In addition, nomogram results determined by risk scores and clinical factors have higher predictive performance. CONCLUSION: We found that LRGS is a reliable biomarker for predicting clinical outcomes, evaluating immune infiltration and efficacy, and predicting the sensitivity to drugs in patients with CRC. John Wiley and Sons Inc. 2023-02-12 /pmc/articles/PMC10166923/ /pubmed/36776001 http://dx.doi.org/10.1002/cam4.5682 Text en © 2023 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Tong, Zhi
Wang, Xinyu
Shi, Sanbao
Hou, Tiewei
Gao, Guangrong
Li, Da
Shan, Yongqi
Zhang, Cheng
Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title_full Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title_fullStr Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title_full_unstemmed Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title_short Development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
title_sort development of lactate‐related gene signature and prediction of overall survival and chemosensitivity in patients with colorectal cancer
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10166923/
https://www.ncbi.nlm.nih.gov/pubmed/36776001
http://dx.doi.org/10.1002/cam4.5682
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