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Multispecies autocatalytic RNA reaction networks in coacervates

Robust localization of self-reproducing autocatalytic chemistries is a key step in the realization of heritable and evolvable chemical systems. While autocatalytic chemical reaction networks already possess attributes such as heritable self-reproduction and evolvability, localizing functional multis...

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Autores principales: Ameta, Sandeep, Kumar, Manoj, Chakraborty, Nayan, Matsubara, Yoshiya J., S, Prashanth, Gandavadi, Dhanush, Thutupalli, Shashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167250/
https://www.ncbi.nlm.nih.gov/pubmed/37156998
http://dx.doi.org/10.1038/s42004-023-00887-5
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author Ameta, Sandeep
Kumar, Manoj
Chakraborty, Nayan
Matsubara, Yoshiya J.
S, Prashanth
Gandavadi, Dhanush
Thutupalli, Shashi
author_facet Ameta, Sandeep
Kumar, Manoj
Chakraborty, Nayan
Matsubara, Yoshiya J.
S, Prashanth
Gandavadi, Dhanush
Thutupalli, Shashi
author_sort Ameta, Sandeep
collection PubMed
description Robust localization of self-reproducing autocatalytic chemistries is a key step in the realization of heritable and evolvable chemical systems. While autocatalytic chemical reaction networks already possess attributes such as heritable self-reproduction and evolvability, localizing functional multispecies networks within complex primitive phases, such as coacervates, has remained unexplored. Here, we show the self-reproduction of the Azoarcus ribozyme system within charge-rich coacervates where catalytic ribozymes are produced by the autocatalytic assembly of constituent smaller RNA fragments. We systematically demonstrate the catalytic assembly of active ribozymes within phase-separated coacervates—both in micron-sized droplets as well as in a coalesced macrophase, underscoring the facility of the complex, charge-rich phase to support these reactions in multiple configurations. By constructing multispecies reaction networks, we show that these newly assembled molecules are active, participating both in self- and cross-catalysis within the coacervates. Finally, due to differential molecular transport, these phase-separated compartments endow robustness to the composition of the collectively autocatalytic networks against external perturbations. Altogether, our results establish the formation of multispecies self-reproducing reaction networks in phase-separated compartments which in turn render transient robustness to the network composition.
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spelling pubmed-101672502023-05-10 Multispecies autocatalytic RNA reaction networks in coacervates Ameta, Sandeep Kumar, Manoj Chakraborty, Nayan Matsubara, Yoshiya J. S, Prashanth Gandavadi, Dhanush Thutupalli, Shashi Commun Chem Article Robust localization of self-reproducing autocatalytic chemistries is a key step in the realization of heritable and evolvable chemical systems. While autocatalytic chemical reaction networks already possess attributes such as heritable self-reproduction and evolvability, localizing functional multispecies networks within complex primitive phases, such as coacervates, has remained unexplored. Here, we show the self-reproduction of the Azoarcus ribozyme system within charge-rich coacervates where catalytic ribozymes are produced by the autocatalytic assembly of constituent smaller RNA fragments. We systematically demonstrate the catalytic assembly of active ribozymes within phase-separated coacervates—both in micron-sized droplets as well as in a coalesced macrophase, underscoring the facility of the complex, charge-rich phase to support these reactions in multiple configurations. By constructing multispecies reaction networks, we show that these newly assembled molecules are active, participating both in self- and cross-catalysis within the coacervates. Finally, due to differential molecular transport, these phase-separated compartments endow robustness to the composition of the collectively autocatalytic networks against external perturbations. Altogether, our results establish the formation of multispecies self-reproducing reaction networks in phase-separated compartments which in turn render transient robustness to the network composition. Nature Publishing Group UK 2023-05-08 /pmc/articles/PMC10167250/ /pubmed/37156998 http://dx.doi.org/10.1038/s42004-023-00887-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Ameta, Sandeep
Kumar, Manoj
Chakraborty, Nayan
Matsubara, Yoshiya J.
S, Prashanth
Gandavadi, Dhanush
Thutupalli, Shashi
Multispecies autocatalytic RNA reaction networks in coacervates
title Multispecies autocatalytic RNA reaction networks in coacervates
title_full Multispecies autocatalytic RNA reaction networks in coacervates
title_fullStr Multispecies autocatalytic RNA reaction networks in coacervates
title_full_unstemmed Multispecies autocatalytic RNA reaction networks in coacervates
title_short Multispecies autocatalytic RNA reaction networks in coacervates
title_sort multispecies autocatalytic rna reaction networks in coacervates
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167250/
https://www.ncbi.nlm.nih.gov/pubmed/37156998
http://dx.doi.org/10.1038/s42004-023-00887-5
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