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VISEM-Tracking, a human spermatozoa tracking dataset

A manual assessment of sperm motility requires microscopy observation, which is challenging due to the fast-moving spermatozoa in the field of view. To obtain correct results, manual evaluation requires extensive training. Therefore, computer-aided sperm analysis (CASA) has become increasingly used...

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Autores principales: Thambawita, Vajira, Hicks, Steven A., Storås, Andrea M., Nguyen, Thu, Andersen, Jorunn M., Witczak, Oliwia, Haugen, Trine B., Hammer, Hugo L., Halvorsen, Pål, Riegler, Michael A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167330/
https://www.ncbi.nlm.nih.gov/pubmed/37156762
http://dx.doi.org/10.1038/s41597-023-02173-4
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author Thambawita, Vajira
Hicks, Steven A.
Storås, Andrea M.
Nguyen, Thu
Andersen, Jorunn M.
Witczak, Oliwia
Haugen, Trine B.
Hammer, Hugo L.
Halvorsen, Pål
Riegler, Michael A.
author_facet Thambawita, Vajira
Hicks, Steven A.
Storås, Andrea M.
Nguyen, Thu
Andersen, Jorunn M.
Witczak, Oliwia
Haugen, Trine B.
Hammer, Hugo L.
Halvorsen, Pål
Riegler, Michael A.
author_sort Thambawita, Vajira
collection PubMed
description A manual assessment of sperm motility requires microscopy observation, which is challenging due to the fast-moving spermatozoa in the field of view. To obtain correct results, manual evaluation requires extensive training. Therefore, computer-aided sperm analysis (CASA) has become increasingly used in clinics. Despite this, more data is needed to train supervised machine learning approaches in order to improve accuracy and reliability in the assessment of sperm motility and kinematics. In this regard, we provide a dataset called VISEM-Tracking with 20 video recordings of 30 seconds (comprising 29,196 frames) of wet semen preparations with manually annotated bounding-box coordinates and a set of sperm characteristics analyzed by experts in the domain. In addition to the annotated data, we provide unlabeled video clips for easy-to-use access and analysis of the data via methods such as self- or unsupervised learning. As part of this paper, we present baseline sperm detection performances using the YOLOv5 deep learning (DL) model trained on the VISEM-Tracking dataset. As a result, we show that the dataset can be used to train complex DL models to analyze spermatozoa.
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spelling pubmed-101673302023-05-10 VISEM-Tracking, a human spermatozoa tracking dataset Thambawita, Vajira Hicks, Steven A. Storås, Andrea M. Nguyen, Thu Andersen, Jorunn M. Witczak, Oliwia Haugen, Trine B. Hammer, Hugo L. Halvorsen, Pål Riegler, Michael A. Sci Data Data Descriptor A manual assessment of sperm motility requires microscopy observation, which is challenging due to the fast-moving spermatozoa in the field of view. To obtain correct results, manual evaluation requires extensive training. Therefore, computer-aided sperm analysis (CASA) has become increasingly used in clinics. Despite this, more data is needed to train supervised machine learning approaches in order to improve accuracy and reliability in the assessment of sperm motility and kinematics. In this regard, we provide a dataset called VISEM-Tracking with 20 video recordings of 30 seconds (comprising 29,196 frames) of wet semen preparations with manually annotated bounding-box coordinates and a set of sperm characteristics analyzed by experts in the domain. In addition to the annotated data, we provide unlabeled video clips for easy-to-use access and analysis of the data via methods such as self- or unsupervised learning. As part of this paper, we present baseline sperm detection performances using the YOLOv5 deep learning (DL) model trained on the VISEM-Tracking dataset. As a result, we show that the dataset can be used to train complex DL models to analyze spermatozoa. Nature Publishing Group UK 2023-05-09 /pmc/articles/PMC10167330/ /pubmed/37156762 http://dx.doi.org/10.1038/s41597-023-02173-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Thambawita, Vajira
Hicks, Steven A.
Storås, Andrea M.
Nguyen, Thu
Andersen, Jorunn M.
Witczak, Oliwia
Haugen, Trine B.
Hammer, Hugo L.
Halvorsen, Pål
Riegler, Michael A.
VISEM-Tracking, a human spermatozoa tracking dataset
title VISEM-Tracking, a human spermatozoa tracking dataset
title_full VISEM-Tracking, a human spermatozoa tracking dataset
title_fullStr VISEM-Tracking, a human spermatozoa tracking dataset
title_full_unstemmed VISEM-Tracking, a human spermatozoa tracking dataset
title_short VISEM-Tracking, a human spermatozoa tracking dataset
title_sort visem-tracking, a human spermatozoa tracking dataset
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167330/
https://www.ncbi.nlm.nih.gov/pubmed/37156762
http://dx.doi.org/10.1038/s41597-023-02173-4
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