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CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma
The prevalence and mortality of hepatocellular carcinoma (HCC) are still increasing. This study aimed to identify potential therapeutic targets related to patient prognosis. Data were downloaded from TCGA, GSE25097, GSE36376, and GSE76427 datasets. Differential analysis and enrichment analysis were...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167346/ https://www.ncbi.nlm.nih.gov/pubmed/37156819 http://dx.doi.org/10.1038/s41598-023-34261-1 |
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author | Tang, Kaihua Li, Xiaoting Mo, Jianwen Chen, Yixuan Huang, Chengyu Li, Ting Luo, Tianjian Zhong, Zhijian Jiang, Yongqiang Yang, Dengfeng Mo, Weiliang |
author_facet | Tang, Kaihua Li, Xiaoting Mo, Jianwen Chen, Yixuan Huang, Chengyu Li, Ting Luo, Tianjian Zhong, Zhijian Jiang, Yongqiang Yang, Dengfeng Mo, Weiliang |
author_sort | Tang, Kaihua |
collection | PubMed |
description | The prevalence and mortality of hepatocellular carcinoma (HCC) are still increasing. This study aimed to identify potential therapeutic targets related to patient prognosis. Data were downloaded from TCGA, GSE25097, GSE36376, and GSE76427 datasets. Differential analysis and enrichment analysis were performed in HCC. Cell deaths were evaluated, and least absolute shrinkage and selection operator regression (LASSO) regression was analyzed to screen candidate genes. Additionally, immune cell infiltration in HCC was assessed. We identified 4088 common DEGs with the same direction of differential expression in all four datasets, they were mainly enriched in immunoinflammation and cell cycle pathways. Apoptosis was significantly suppressed in HCC in GSEA and GSVA. After LASSO regression analysis, we screened CD69, CDC25B, MGMT, TOP2A, and TXNIP as candidate genes. Among them, CD69 significantly influenced the overall survival of HCC patients in both TCGA and GSE76427. CD69 may be a protective factor for outcome of HCC patients. In addition, CD69 was positive correlation with T cells and CD3E. CD69, CDC25B, MGMT, TOP2A, and TXNIP were potential diagnostic and prognostic target for HCC, especially CD69. |
format | Online Article Text |
id | pubmed-10167346 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101673462023-05-10 CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma Tang, Kaihua Li, Xiaoting Mo, Jianwen Chen, Yixuan Huang, Chengyu Li, Ting Luo, Tianjian Zhong, Zhijian Jiang, Yongqiang Yang, Dengfeng Mo, Weiliang Sci Rep Article The prevalence and mortality of hepatocellular carcinoma (HCC) are still increasing. This study aimed to identify potential therapeutic targets related to patient prognosis. Data were downloaded from TCGA, GSE25097, GSE36376, and GSE76427 datasets. Differential analysis and enrichment analysis were performed in HCC. Cell deaths were evaluated, and least absolute shrinkage and selection operator regression (LASSO) regression was analyzed to screen candidate genes. Additionally, immune cell infiltration in HCC was assessed. We identified 4088 common DEGs with the same direction of differential expression in all four datasets, they were mainly enriched in immunoinflammation and cell cycle pathways. Apoptosis was significantly suppressed in HCC in GSEA and GSVA. After LASSO regression analysis, we screened CD69, CDC25B, MGMT, TOP2A, and TXNIP as candidate genes. Among them, CD69 significantly influenced the overall survival of HCC patients in both TCGA and GSE76427. CD69 may be a protective factor for outcome of HCC patients. In addition, CD69 was positive correlation with T cells and CD3E. CD69, CDC25B, MGMT, TOP2A, and TXNIP were potential diagnostic and prognostic target for HCC, especially CD69. Nature Publishing Group UK 2023-05-08 /pmc/articles/PMC10167346/ /pubmed/37156819 http://dx.doi.org/10.1038/s41598-023-34261-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Tang, Kaihua Li, Xiaoting Mo, Jianwen Chen, Yixuan Huang, Chengyu Li, Ting Luo, Tianjian Zhong, Zhijian Jiang, Yongqiang Yang, Dengfeng Mo, Weiliang CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title | CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title_full | CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title_fullStr | CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title_full_unstemmed | CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title_short | CD69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
title_sort | cd69 serves as a potential diagnostic and prognostic biomarker for hepatocellular carcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167346/ https://www.ncbi.nlm.nih.gov/pubmed/37156819 http://dx.doi.org/10.1038/s41598-023-34261-1 |
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