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OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology

Numerous studies have been published which, separately, investigate the influence of molecular features on oncological and cardiac pathologies. Nevertheless, the relationship between both families of diseases at the molecular level is an emerging area within onco-cardiology/cardio-oncology. This pap...

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Detalles Bibliográficos
Autores principales: Riffo-Campos, Angela L, Domingo, Juan, Dura, Esther
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167979/
https://www.ncbi.nlm.nih.gov/pubmed/37159238
http://dx.doi.org/10.1093/database/baad029
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author Riffo-Campos, Angela L
Domingo, Juan
Dura, Esther
author_facet Riffo-Campos, Angela L
Domingo, Juan
Dura, Esther
author_sort Riffo-Campos, Angela L
collection PubMed
description Numerous studies have been published which, separately, investigate the influence of molecular features on oncological and cardiac pathologies. Nevertheless, the relationship between both families of diseases at the molecular level is an emerging area within onco-cardiology/cardio-oncology. This paper presents a new open-source database that aims to organize the curated information concerning the molecular features validated in patients involved in both cancer and cardiovascular diseases. Entities like gene, variation, drug, study and others are modelled as objects of a database which is populated with curated information from 83 papers identified by systematic literature searched for up to 2021. Researchers will discover new connections among them to validate hypotheses or suggest new ones. Special care has been taken to use standard nomenclature for genes, pathologies and all the objects for which accepted conventions exist. The database can be consulted via the web with a system of simplified queries, but it also accepts any query. It will be updated and refined with the incorporation of new studies as they become available. Database URL http://biodb.uv.es/oncocardio/
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spelling pubmed-101679792023-05-10 OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology Riffo-Campos, Angela L Domingo, Juan Dura, Esther Database (Oxford) Original Article Numerous studies have been published which, separately, investigate the influence of molecular features on oncological and cardiac pathologies. Nevertheless, the relationship between both families of diseases at the molecular level is an emerging area within onco-cardiology/cardio-oncology. This paper presents a new open-source database that aims to organize the curated information concerning the molecular features validated in patients involved in both cancer and cardiovascular diseases. Entities like gene, variation, drug, study and others are modelled as objects of a database which is populated with curated information from 83 papers identified by systematic literature searched for up to 2021. Researchers will discover new connections among them to validate hypotheses or suggest new ones. Special care has been taken to use standard nomenclature for genes, pathologies and all the objects for which accepted conventions exist. The database can be consulted via the web with a system of simplified queries, but it also accepts any query. It will be updated and refined with the incorporation of new studies as they become available. Database URL http://biodb.uv.es/oncocardio/ Oxford University Press 2023-05-09 /pmc/articles/PMC10167979/ /pubmed/37159238 http://dx.doi.org/10.1093/database/baad029 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Article
Riffo-Campos, Angela L
Domingo, Juan
Dura, Esther
OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title_full OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title_fullStr OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title_full_unstemmed OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title_short OncoCardioDB: a public and curated database of molecular information in onco-cardiology/cardio-oncology
title_sort oncocardiodb: a public and curated database of molecular information in onco-cardiology/cardio-oncology
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167979/
https://www.ncbi.nlm.nih.gov/pubmed/37159238
http://dx.doi.org/10.1093/database/baad029
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