Cargando…

SyntenyViewer: a comparative genomics-driven translational research tool

SyntenyViewer is a public web-based tool relying on a relational database available at https://urgi.versailles.inrae.fr/synteny delivering comparative genomics data and associated reservoir of conserved genes between angiosperm species for both fundamental (evolutionary studies) and applied (transla...

Descripción completa

Detalles Bibliográficos
Autores principales:	Flores, Raphael, Huneau, Cécile, Burlot, Laura, Lainé, Mathilde, Kimmel, Erik, Pommier, Cyril, Alaux, Michael, Adam-Blondon, Anne-Françoise, Pont, Caroline, Quesneville, Hadi, Salse, Jerome
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Database Tool
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10167986/ https://www.ncbi.nlm.nih.gov/pubmed/37159239 http://dx.doi.org/10.1093/database/baad027

Ejemplares similares

Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data
por: Alaux, Michael, et al.
Publicado: (2018)

GnpIS: an information system to integrate genetic and genomic data from plants and fungi
por: Steinbach, Delphine, et al.
Publicado: (2013)

Combined Genomic and Genetic Data Integration of Major Agronomical Traits in Bread Wheat (Triticum aestivum L.)
por: Quraishi, Umar M., et al.
Publicado: (2017)

A comparative synteny analysis tool for target-gene SNP marker discovery: connecting genomics data to breeding in Solanaceae
por: Choe, Junkyoung, et al.
Publicado: (2018)

miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies
por: Pan, Chao-Yu, et al.
Publicado: (2020)

OrthoClusterDB: an online platform for synteny blocks
por: Ng, Man-Ping, et al.
Publicado: (2009)

RepetDB: a unified resource for transposable element references
por: Amselem, Joëlle, et al.
Publicado: (2019)

A comparative map viewer integrating genetic maps for Brassica and Arabidopsis
por: Lim, Geraldine AC, et al.
Publicado: (2007)

The Saccharomyces Genome Database Variant Viewer
por: Sheppard, Travis K., et al.
Publicado: (2016)

JET2 Viewer: a database of predicted multiple, possibly overlapping, protein–protein interaction sites for PDB structures
por: Ripoche, Hugues, et al.
Publicado: (2017)

GSV: a web-based genome synteny viewer for customized data
por: Revanna, Kashi V, et al.
Publicado: (2011)

A web-based multi-genome synteny viewer for customized data
por: Revanna, Kashi V, et al.
Publicado: (2012)

The bovine QTL viewer: a web accessible database of bovine Quantitative Trait Loci
por: Polineni, Pavana, et al.
Publicado: (2006)

HeatMapViewer: interactive display of 2D data in biology
por: Yachdav, Guy, et al.
Publicado: (2014)

Genomicus 2018: karyotype evolutionary trees and on-the-fly synteny computing
por: Nguyen, Nga Thi Thuy, et al.
Publicado: (2018)

SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
por: Kahn, Ari B, et al.
Publicado: (2007)

AlignmentViewer: Sequence Analysis of Large Protein Families
por: Reguant, Roc, et al.
Publicado: (2020)

FeatureViewer, a BioJS component for visualization of position-based annotations in protein sequences
por: Garcia, Leyla, et al.
Publicado: (2014)

QlicRice: a web interface for abiotic stress responsive QTL and loci interaction channels in rice
por: Smita, Shuchi, et al.
Publicado: (2011)

ppiTrim: constructing non-redundant and up-to-date interactomes
por: Stojmirović, Aleksandar, et al.
Publicado: (2011)

The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database
por: Davis, Allan Peter, et al.
Publicado: (2011)

CyanoClust: comparative genome resources of cyanobacteria and plastids
por: Sasaki, Naobumi V., et al.
Publicado: (2010)

ScreenTroll: a searchable database to compare genome-wide yeast screens
por: Thorpe, Peter H., et al.
Publicado: (2012)

MSV3d: database of human MisSense variants mapped to 3D protein structure
por: Luu, Tien-Dao, et al.
Publicado: (2012)

HAltORF: a database of predicted out-of-frame alternative open reading frames in human
por: Vanderperre, Benoît, et al.
Publicado: (2012)

3DSwap: curated knowledgebase of proteins involved in 3D domain swapping
por: Shameer, Khader, et al.
Publicado: (2011)

CPPsite: a curated database of cell penetrating peptides
por: Gautam, Ankur, et al.
Publicado: (2012)

Analysis and visualization of Arabidopsis thaliana GWAS using web 2.0 technologies
por: Huang, Yu S., et al.
Publicado: (2011)

Tripal: a construction toolkit for online genome databases
por: Ficklin, Stephen P., et al.
Publicado: (2011)

The Chado Natural Diversity module: a new generic database schema for large-scale phenotyping and genotyping data
por: Jung, Sook, et al.
Publicado: (2011)

ParkDB: a Parkinson’s disease gene expression database
por: Taccioli, Cristian, et al.
Publicado: (2011)

Automatic annotation of experimentally derived, evolutionarily conserved post-translational modifications onto multiple genomes
por: Sridhara, Viswanadham, et al.
Publicado: (2011)

The systematic annotation of the three main GPCR families in Reactome
por: Jassal, Bijay, et al.
Publicado: (2010)

IGVBrowser–a genomic variation resource from diverse Indian populations
por: Narang, Ankita, et al.
Publicado: (2010)

ORION-VIRCAT: a tool for mapping ICTV and NCBI taxonomies
por: Valdivia-Granda, Willy, et al.
Publicado: (2009)

Varietas: a functional variation database portal
por: Paananen, Jussi, et al.
Publicado: (2010)

Bookshelf: a simple curation system for the storage of biomolecular simulation data
por: Vohra, Shabana, et al.
Publicado: (2010)

RNAiAtlas: a database for RNAi (siRNA) libraries and their specificity
por: Mazur, Sławek, et al.
Publicado: (2012)

ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species
por: Zeng, Victor, et al.
Publicado: (2012)

The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria
por: Rangel, Luiz Thibério, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_no3ft0hrejse6dt0o4cjv02j49