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Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protoc...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168237/ https://www.ncbi.nlm.nih.gov/pubmed/37162974 http://dx.doi.org/10.1101/2023.04.25.537918 |
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author | Willett, Julia L. E. Barnes, Aaron M. T. Brunson, Debra N. Lecomte, Alexandre Robertson, Ethan B. Dunny, Gary M. |
author_facet | Willett, Julia L. E. Barnes, Aaron M. T. Brunson, Debra N. Lecomte, Alexandre Robertson, Ethan B. Dunny, Gary M. |
author_sort | Willett, Julia L. E. |
collection | PubMed |
description | Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protocol for creating multiple replicates of an arrayed bacterial Tn library consisting of approximately 6,800 mutants in 73 × 96-well plates. Our protocol provides multiple checkpoints to guard against contamination and minimize genetic drift caused by freeze/thaw cycles. This approach can also be scaled for arrayed culture collections of various sizes. Overall, this protocol is a valuable resource for other researchers considering the construction and distribution of arrayed culture collection resources for the benefit of the greater scientific community. |
format | Online Article Text |
id | pubmed-10168237 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Cold Spring Harbor Laboratory |
record_format | MEDLINE/PubMed |
spelling | pubmed-101682372023-05-10 Optimized replication of arrayed bacterial mutant libraries increase access to biological resources Willett, Julia L. E. Barnes, Aaron M. T. Brunson, Debra N. Lecomte, Alexandre Robertson, Ethan B. Dunny, Gary M. bioRxiv Article Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protocol for creating multiple replicates of an arrayed bacterial Tn library consisting of approximately 6,800 mutants in 73 × 96-well plates. Our protocol provides multiple checkpoints to guard against contamination and minimize genetic drift caused by freeze/thaw cycles. This approach can also be scaled for arrayed culture collections of various sizes. Overall, this protocol is a valuable resource for other researchers considering the construction and distribution of arrayed culture collection resources for the benefit of the greater scientific community. Cold Spring Harbor Laboratory 2023-04-25 /pmc/articles/PMC10168237/ /pubmed/37162974 http://dx.doi.org/10.1101/2023.04.25.537918 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator. |
spellingShingle | Article Willett, Julia L. E. Barnes, Aaron M. T. Brunson, Debra N. Lecomte, Alexandre Robertson, Ethan B. Dunny, Gary M. Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title | Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title_full | Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title_fullStr | Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title_full_unstemmed | Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title_short | Optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
title_sort | optimized replication of arrayed bacterial mutant libraries increase access to biological resources |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168237/ https://www.ncbi.nlm.nih.gov/pubmed/37162974 http://dx.doi.org/10.1101/2023.04.25.537918 |
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