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Optimized replication of arrayed bacterial mutant libraries increase access to biological resources

Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protoc...

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Autores principales: Willett, Julia L. E., Barnes, Aaron M. T., Brunson, Debra N., Lecomte, Alexandre, Robertson, Ethan B., Dunny, Gary M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168237/
https://www.ncbi.nlm.nih.gov/pubmed/37162974
http://dx.doi.org/10.1101/2023.04.25.537918
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author Willett, Julia L. E.
Barnes, Aaron M. T.
Brunson, Debra N.
Lecomte, Alexandre
Robertson, Ethan B.
Dunny, Gary M.
author_facet Willett, Julia L. E.
Barnes, Aaron M. T.
Brunson, Debra N.
Lecomte, Alexandre
Robertson, Ethan B.
Dunny, Gary M.
author_sort Willett, Julia L. E.
collection PubMed
description Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protocol for creating multiple replicates of an arrayed bacterial Tn library consisting of approximately 6,800 mutants in 73 × 96-well plates. Our protocol provides multiple checkpoints to guard against contamination and minimize genetic drift caused by freeze/thaw cycles. This approach can also be scaled for arrayed culture collections of various sizes. Overall, this protocol is a valuable resource for other researchers considering the construction and distribution of arrayed culture collection resources for the benefit of the greater scientific community.
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spelling pubmed-101682372023-05-10 Optimized replication of arrayed bacterial mutant libraries increase access to biological resources Willett, Julia L. E. Barnes, Aaron M. T. Brunson, Debra N. Lecomte, Alexandre Robertson, Ethan B. Dunny, Gary M. bioRxiv Article Biological collections, including arrayed libraries of single transposon or deletion mutants, greatly accelerate the pace of bacterial genetics research. Despite the importance of these resources, few protocols exist for the replication and distribution of these materials. Here, we describe a protocol for creating multiple replicates of an arrayed bacterial Tn library consisting of approximately 6,800 mutants in 73 × 96-well plates. Our protocol provides multiple checkpoints to guard against contamination and minimize genetic drift caused by freeze/thaw cycles. This approach can also be scaled for arrayed culture collections of various sizes. Overall, this protocol is a valuable resource for other researchers considering the construction and distribution of arrayed culture collection resources for the benefit of the greater scientific community. Cold Spring Harbor Laboratory 2023-04-25 /pmc/articles/PMC10168237/ /pubmed/37162974 http://dx.doi.org/10.1101/2023.04.25.537918 Text en https://creativecommons.org/licenses/by-nc-nd/4.0/This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which allows reusers to copy and distribute the material in any medium or format in unadapted form only, for noncommercial purposes only, and only so long as attribution is given to the creator.
spellingShingle Article
Willett, Julia L. E.
Barnes, Aaron M. T.
Brunson, Debra N.
Lecomte, Alexandre
Robertson, Ethan B.
Dunny, Gary M.
Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title_full Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title_fullStr Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title_full_unstemmed Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title_short Optimized replication of arrayed bacterial mutant libraries increase access to biological resources
title_sort optimized replication of arrayed bacterial mutant libraries increase access to biological resources
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168237/
https://www.ncbi.nlm.nih.gov/pubmed/37162974
http://dx.doi.org/10.1101/2023.04.25.537918
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