Cargando…

Digital PCR cluster predictor: a universal R-package and shiny app for the automated analysis of multiplex digital PCR data

Digital polymerase chain reaction (dPCR) is an emerging technology that enables accurate and sensitive quantification of nucleic acids. Most available dPCR systems have two channel optics, with ad hoc software limited to the analysis of single and duplex assays. Although multiplexing strategies were...

Descripción completa

Detalles Bibliográficos
Autores principales:	De Falco, Alfonso, Olinger, Christophe M, Klink, Barbara, Mittelbronn, Michel, Stieber, Daniel
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2023
Materias:	Applications Note
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10168580/ https://www.ncbi.nlm.nih.gov/pubmed/37086434 http://dx.doi.org/10.1093/bioinformatics/btad282

Ejemplares similares

twoddpcr: an R/Bioconductor package and Shiny app for Droplet Digital PCR analysis
por: Chiu, Anthony, et al.
Publicado: (2017)

ddPCRclust: an R package and Shiny app for automated analysis of multiplexed ddPCR data
por: Brink, Benedikt G, et al.
Publicado: (2018)

CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis
por: Badgeley, Marcus A, et al.
Publicado: (2019)

beeRapp: an R shiny app for automated high-throughput explorative analysis of multivariate behavioral data
por: Busch, Anne Marie, et al.
Publicado: (2022)

CREPE: a Shiny app for transcription factor cataloguing
por: Rosado-Tristani, Diego A, et al.
Publicado: (2023)

DEGGs: an R package with shiny app for the identification of differentially expressed gene–gene interactions in high-throughput sequencing data
por: Sciacca, Elisabetta, et al.
Publicado: (2023)

ShinyBioHEAT: an interactive shiny app to identify phenotype driver genes in E.coli and B.subtilis
por: Wang, Chen, et al.
Publicado: (2023)

UCSCXenaShiny: an R/CRAN package for interactive analysis of UCSC Xena data
por: Wang, Shixiang, et al.
Publicado: (2021)

DepLink: an R Shiny app to systematically link genetic and pharmacologic dependencies of cancer
por: Nayak, Tapsya, et al.
Publicado: (2023)

spatialTIME and iTIME: R package and Shiny application for visualization and analysis of immunofluorescence data
por: Creed, Jordan H, et al.
Publicado: (2021)

BodyMapR: an R package and Shiny application designed to generate anatomical visualizations of cancer lesions
por: Miller, David M, et al.
Publicado: (2022)

High-accuracy quantitative principle of a new compact digital PCR equipment: Lab On An Array
por: Lee, Haeun, et al.
Publicado: (2021)

PoDCall: positive droplet calling and normalization of droplet digital PCR DNA methylation data
por: Jeanmougin, Marine, et al.
Publicado: (2022)

shinyChromosome: An R/Shiny Application for Interactive Creation of Non-circular Plots of Whole Genomes
por: Yu, Yiming, et al.
Publicado: (2019)

StoryboardR: an R package and Shiny application designed to visualize real-world data from clinical patient registries
por: Miller, David M, et al.
Publicado: (2023)

Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell data
por: Knight, Parker, et al.
Publicado: (2021)

GENETEX—a GENomics Report TEXt mining R package and Shiny application designed to capture real-world clinico-genomic data
por: Miller, David M, et al.
Publicado: (2021)

powerEQTL: an R package and shiny application for sample size and power calculation of bulk tissue and single-cell eQTL analysis
por: Dong, Xianjun, et al.
Publicado: (2021)

Fundamentals of multiplexing with digital PCR
por: Whale, Alexandra S., et al.
Publicado: (2016)

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
por: Robinson, Mark D., et al.
Publicado: (2010)

A public website for the automated assessment and validation of SARS-CoV-2 diagnostic PCR assays
por: Li, Po-E, et al.
Publicado: (2020)

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking
por: McMurdie, Paul J., et al.
Publicado: (2015)

iDINGO—integrative differential network analysis in genomics with Shiny application
por: Class, Caleb A, et al.
Publicado: (2018)

EDTox: an R Shiny application to predict the endocrine disruption potential of compounds
por: Sakhteman, Amirhossein, et al.
Publicado: (2022)

VCFshiny: an R/Shiny application for interactively analyzing and visualizing genetic variants
por: Chen, Tao, et al.
Publicado: (2023)

ePCR: an R-package for survival and time-to-event prediction in advanced prostate cancer, applied to real-world patient cohorts
por: Laajala, Teemu D, et al.
Publicado: (2018)

Gene2DGE: A Perl Package for Gene Model Renewal with Digital Gene Expression Data
por: Tang, Xiaoli, et al.
Publicado: (2012)

cytomapper: an R/Bioconductor package for visualization of highly multiplexed imaging data
por: Eling, Nils, et al.
Publicado: (2020)

HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R
por: Dvinge, Heidi, et al.
Publicado: (2009)

ShinyKGode: an interactive application for ODE parameter inference using gradient matching
por: Wandy, Joe, et al.
Publicado: (2018)

ShinySOM: graphical SOM-based analysis of single-cell cytometry data
por: Kratochvíl, Miroslav, et al.
Publicado: (2020)

MatrixQCvis: shiny-based interactive data quality exploration for omics data
por: Naake, Thomas, et al.
Publicado: (2021)

ViReMaShiny: an interactive application for analysis of viral recombination data
por: Yeung, Jason, et al.
Publicado: (2022)

MethPanel: a parallel pipeline and interactive analysis tool for multiplex bisulphite PCR sequencing to assess DNA methylation biomarker panels for disease detection
por: Luu, Phuc-Loi, et al.
Publicado: (2020)

DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments
por: Trébeau, Céline, et al.
Publicado: (2019)

IVAG: An Integrative Visualization Application for Various Types of Genomic Data Based on R-Shiny and the Docker Platform
por: Lee, Tae-Rim, et al.
Publicado: (2017)

checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes
por: Varet, Hugo, et al.
Publicado: (2019)

IntestLine: a shiny-based application to map the rolled intestinal tissue onto a line
por: Yuzeir, Altay, et al.
Publicado: (2023)

clustComp, a bioconductor package for the comparison of clustering results
por: Torrente, Aurora, et al.
Publicado: (2017)

V-SVA: an R Shiny application for detecting and annotating hidden sources of variation in single-cell RNA-seq data
por: Lawlor, Nathan, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_rf7nfloit6cggie259mo6rcevk