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DETEXA: declarative extensible text exploration and analysis through SQL
Metadata enrichment through text mining techniques is becoming one of the most significant tasks in digital libraries. Due to the exponential increase of open access publications, several new challenges have emerged. Raw data are usually big, unstructured, and come from heterogeneous data sources. I...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170051/ https://www.ncbi.nlm.nih.gov/pubmed/37361128 http://dx.doi.org/10.1007/s00799-023-00358-1 |
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author | Foufoulas, Yannis Zacharia, Eleni Dimitropoulos, Harry Manola, Natalia Ioannidis, Yannis |
author_facet | Foufoulas, Yannis Zacharia, Eleni Dimitropoulos, Harry Manola, Natalia Ioannidis, Yannis |
author_sort | Foufoulas, Yannis |
collection | PubMed |
description | Metadata enrichment through text mining techniques is becoming one of the most significant tasks in digital libraries. Due to the exponential increase of open access publications, several new challenges have emerged. Raw data are usually big, unstructured, and come from heterogeneous data sources. In this paper, we introduce a text analysis framework implemented in extended SQL that exploits the scalability characteristics of modern database management systems. The purpose of this framework is to provide the opportunity to build performant end-to-end text mining pipelines which include data harvesting, cleaning, processing, and text analysis at once. SQL is selected due to its declarative nature which offers fast experimentation and the ability to build APIs so that domain experts can edit text mining workflows via easy-to-use graphical interfaces. Our experimental analysis demonstrates that the proposed framework is very effective and achieves significant speedup, up to three times faster, in common use cases compared to other popular approaches. |
format | Online Article Text |
id | pubmed-10170051 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-101700512023-05-11 DETEXA: declarative extensible text exploration and analysis through SQL Foufoulas, Yannis Zacharia, Eleni Dimitropoulos, Harry Manola, Natalia Ioannidis, Yannis Int J Digit Libr Article Metadata enrichment through text mining techniques is becoming one of the most significant tasks in digital libraries. Due to the exponential increase of open access publications, several new challenges have emerged. Raw data are usually big, unstructured, and come from heterogeneous data sources. In this paper, we introduce a text analysis framework implemented in extended SQL that exploits the scalability characteristics of modern database management systems. The purpose of this framework is to provide the opportunity to build performant end-to-end text mining pipelines which include data harvesting, cleaning, processing, and text analysis at once. SQL is selected due to its declarative nature which offers fast experimentation and the ability to build APIs so that domain experts can edit text mining workflows via easy-to-use graphical interfaces. Our experimental analysis demonstrates that the proposed framework is very effective and achieves significant speedup, up to three times faster, in common use cases compared to other popular approaches. Springer Berlin Heidelberg 2023-05-10 /pmc/articles/PMC10170051/ /pubmed/37361128 http://dx.doi.org/10.1007/s00799-023-00358-1 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Foufoulas, Yannis Zacharia, Eleni Dimitropoulos, Harry Manola, Natalia Ioannidis, Yannis DETEXA: declarative extensible text exploration and analysis through SQL |
title | DETEXA: declarative extensible text exploration and analysis through SQL |
title_full | DETEXA: declarative extensible text exploration and analysis through SQL |
title_fullStr | DETEXA: declarative extensible text exploration and analysis through SQL |
title_full_unstemmed | DETEXA: declarative extensible text exploration and analysis through SQL |
title_short | DETEXA: declarative extensible text exploration and analysis through SQL |
title_sort | detexa: declarative extensible text exploration and analysis through sql |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170051/ https://www.ncbi.nlm.nih.gov/pubmed/37361128 http://dx.doi.org/10.1007/s00799-023-00358-1 |
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