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Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo

Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically chal...

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Autores principales: Nattermann, Maren, Wenk, Sebastian, Pfister, Pascal, He, Hai, Lee, Seung Hwan, Szymanski, Witold, Guntermann, Nils, Zhu, Fayin, Nickel, Lennart, Wallner, Charlotte, Zarzycki, Jan, Paczia, Nicole, Gaißert, Nina, Franciò, Giancarlo, Leitner, Walter, Gonzalez, Ramon, Erb, Tobias J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170137/
https://www.ncbi.nlm.nih.gov/pubmed/37160875
http://dx.doi.org/10.1038/s41467-023-38072-w
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author Nattermann, Maren
Wenk, Sebastian
Pfister, Pascal
He, Hai
Lee, Seung Hwan
Szymanski, Witold
Guntermann, Nils
Zhu, Fayin
Nickel, Lennart
Wallner, Charlotte
Zarzycki, Jan
Paczia, Nicole
Gaißert, Nina
Franciò, Giancarlo
Leitner, Walter
Gonzalez, Ramon
Erb, Tobias J.
author_facet Nattermann, Maren
Wenk, Sebastian
Pfister, Pascal
He, Hai
Lee, Seung Hwan
Szymanski, Witold
Guntermann, Nils
Zhu, Fayin
Nickel, Lennart
Wallner, Charlotte
Zarzycki, Jan
Paczia, Nicole
Gaißert, Nina
Franciò, Giancarlo
Leitner, Walter
Gonzalez, Ramon
Erb, Tobias J.
author_sort Nattermann, Maren
collection PubMed
description Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically challenging reduction to formaldehyde. Here, we develop a two-enzyme route in which formate is activated to formyl phosphate and subsequently reduced to formaldehyde. Exploiting the promiscuity of acetate kinase and N-acetyl-γ-glutamyl phosphate reductase, we demonstrate this phosphate (P(i))-based route in vitro and in vivo. We further engineer a formyl phosphate reductase variant with improved formyl phosphate conversion in vivo by suppressing cross-talk with native metabolism and interface the P(i) route with a recently developed formaldehyde assimilation pathway to enable C2 compound formation from formate as the sole carbon source in Escherichia coli. The P(i) route therefore offers a potent tool in expanding the landscape of synthetic formate assimilation.
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spelling pubmed-101701372023-05-11 Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo Nattermann, Maren Wenk, Sebastian Pfister, Pascal He, Hai Lee, Seung Hwan Szymanski, Witold Guntermann, Nils Zhu, Fayin Nickel, Lennart Wallner, Charlotte Zarzycki, Jan Paczia, Nicole Gaißert, Nina Franciò, Giancarlo Leitner, Walter Gonzalez, Ramon Erb, Tobias J. Nat Commun Article Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically challenging reduction to formaldehyde. Here, we develop a two-enzyme route in which formate is activated to formyl phosphate and subsequently reduced to formaldehyde. Exploiting the promiscuity of acetate kinase and N-acetyl-γ-glutamyl phosphate reductase, we demonstrate this phosphate (P(i))-based route in vitro and in vivo. We further engineer a formyl phosphate reductase variant with improved formyl phosphate conversion in vivo by suppressing cross-talk with native metabolism and interface the P(i) route with a recently developed formaldehyde assimilation pathway to enable C2 compound formation from formate as the sole carbon source in Escherichia coli. The P(i) route therefore offers a potent tool in expanding the landscape of synthetic formate assimilation. Nature Publishing Group UK 2023-05-09 /pmc/articles/PMC10170137/ /pubmed/37160875 http://dx.doi.org/10.1038/s41467-023-38072-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Nattermann, Maren
Wenk, Sebastian
Pfister, Pascal
He, Hai
Lee, Seung Hwan
Szymanski, Witold
Guntermann, Nils
Zhu, Fayin
Nickel, Lennart
Wallner, Charlotte
Zarzycki, Jan
Paczia, Nicole
Gaißert, Nina
Franciò, Giancarlo
Leitner, Walter
Gonzalez, Ramon
Erb, Tobias J.
Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title_full Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title_fullStr Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title_full_unstemmed Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title_short Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
title_sort engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170137/
https://www.ncbi.nlm.nih.gov/pubmed/37160875
http://dx.doi.org/10.1038/s41467-023-38072-w
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