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Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo
Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically chal...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170137/ https://www.ncbi.nlm.nih.gov/pubmed/37160875 http://dx.doi.org/10.1038/s41467-023-38072-w |
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author | Nattermann, Maren Wenk, Sebastian Pfister, Pascal He, Hai Lee, Seung Hwan Szymanski, Witold Guntermann, Nils Zhu, Fayin Nickel, Lennart Wallner, Charlotte Zarzycki, Jan Paczia, Nicole Gaißert, Nina Franciò, Giancarlo Leitner, Walter Gonzalez, Ramon Erb, Tobias J. |
author_facet | Nattermann, Maren Wenk, Sebastian Pfister, Pascal He, Hai Lee, Seung Hwan Szymanski, Witold Guntermann, Nils Zhu, Fayin Nickel, Lennart Wallner, Charlotte Zarzycki, Jan Paczia, Nicole Gaißert, Nina Franciò, Giancarlo Leitner, Walter Gonzalez, Ramon Erb, Tobias J. |
author_sort | Nattermann, Maren |
collection | PubMed |
description | Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically challenging reduction to formaldehyde. Here, we develop a two-enzyme route in which formate is activated to formyl phosphate and subsequently reduced to formaldehyde. Exploiting the promiscuity of acetate kinase and N-acetyl-γ-glutamyl phosphate reductase, we demonstrate this phosphate (P(i))-based route in vitro and in vivo. We further engineer a formyl phosphate reductase variant with improved formyl phosphate conversion in vivo by suppressing cross-talk with native metabolism and interface the P(i) route with a recently developed formaldehyde assimilation pathway to enable C2 compound formation from formate as the sole carbon source in Escherichia coli. The P(i) route therefore offers a potent tool in expanding the landscape of synthetic formate assimilation. |
format | Online Article Text |
id | pubmed-10170137 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101701372023-05-11 Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo Nattermann, Maren Wenk, Sebastian Pfister, Pascal He, Hai Lee, Seung Hwan Szymanski, Witold Guntermann, Nils Zhu, Fayin Nickel, Lennart Wallner, Charlotte Zarzycki, Jan Paczia, Nicole Gaißert, Nina Franciò, Giancarlo Leitner, Walter Gonzalez, Ramon Erb, Tobias J. Nat Commun Article Formate can be envisioned at the core of a carbon-neutral bioeconomy, where it is produced from CO(2) by (electro-)chemical means and converted into value-added products by enzymatic cascades or engineered microbes. A key step in expanding synthetic formate assimilation is its thermodynamically challenging reduction to formaldehyde. Here, we develop a two-enzyme route in which formate is activated to formyl phosphate and subsequently reduced to formaldehyde. Exploiting the promiscuity of acetate kinase and N-acetyl-γ-glutamyl phosphate reductase, we demonstrate this phosphate (P(i))-based route in vitro and in vivo. We further engineer a formyl phosphate reductase variant with improved formyl phosphate conversion in vivo by suppressing cross-talk with native metabolism and interface the P(i) route with a recently developed formaldehyde assimilation pathway to enable C2 compound formation from formate as the sole carbon source in Escherichia coli. The P(i) route therefore offers a potent tool in expanding the landscape of synthetic formate assimilation. Nature Publishing Group UK 2023-05-09 /pmc/articles/PMC10170137/ /pubmed/37160875 http://dx.doi.org/10.1038/s41467-023-38072-w Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Nattermann, Maren Wenk, Sebastian Pfister, Pascal He, Hai Lee, Seung Hwan Szymanski, Witold Guntermann, Nils Zhu, Fayin Nickel, Lennart Wallner, Charlotte Zarzycki, Jan Paczia, Nicole Gaißert, Nina Franciò, Giancarlo Leitner, Walter Gonzalez, Ramon Erb, Tobias J. Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title | Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title_full | Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title_fullStr | Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title_full_unstemmed | Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title_short | Engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
title_sort | engineering a new-to-nature cascade for phosphate-dependent formate to formaldehyde conversion in vitro and in vivo |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170137/ https://www.ncbi.nlm.nih.gov/pubmed/37160875 http://dx.doi.org/10.1038/s41467-023-38072-w |
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