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N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients

Background: The connection between m6A-assiociateed lncRNAs and prognosis has been demonstrated in multiple types of tumors. However, potential roles of m6A-assiociateed lncRNAs in glioma is still rare. Methods: We implemented consensus cluster analysis to group the downloaded samples into two subty...

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Autores principales: Wu, Wei Jun, Xiao, Feng, Xiong, Yaping, Sun, Gu Feng, Guo, Yun, Zhou, Xiang, Hu, Guo Wen, Huang, Kai, Guo, Hua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Portland Press Ltd. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170299/
https://www.ncbi.nlm.nih.gov/pubmed/37083719
http://dx.doi.org/10.1042/BSR20222100
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author Wu, Wei Jun
Xiao, Feng
Xiong, Yaping
Sun, Gu Feng
Guo, Yun
Zhou, Xiang
Hu, Guo Wen
Huang, Kai
Guo, Hua
author_facet Wu, Wei Jun
Xiao, Feng
Xiong, Yaping
Sun, Gu Feng
Guo, Yun
Zhou, Xiang
Hu, Guo Wen
Huang, Kai
Guo, Hua
author_sort Wu, Wei Jun
collection PubMed
description Background: The connection between m6A-assiociateed lncRNAs and prognosis has been demonstrated in multiple types of tumors. However, potential roles of m6A-assiociateed lncRNAs in glioma is still rare. Methods: We implemented consensus cluster analysis to group the downloaded samples into two subtypes. The least absolute shrinkage and selection operator (LASSO) analysis was used to create a risk model. Additionally, the conjunction between m6A-related lncRNAs and immune cells infiltration was explored by conducting the R package. Ultimately, we inspected the underlying downstream pathways of the two subtypes by performing Gene Set Enrichment Analysis (GSEA). The expression level of m6A-connected lncRNAs in glioma were examined by conducting in vitro experiments. Results: We ascertained two subtypes of glioma in line with the consensus clustering of m6A-associated lncRNAs. We confirmed that age, grade, and IDH are related to the two subtypes. Additionally, the immune cells infiltration and immune checkpoint molecules of the two clusters were discussed. A risk signature including AL359643.3, AL445524.1, AL162231.2, AL117332.1, AP001486.2, POLR2J4, AC120036.4, LINC00641, LINC00900, CRNDE, and AL158212.3, was identified using the Cox regression and LASSO analyses. We also verified the prognostic value and discussed the immune cells infiltration and immune checkpoint molecules of the risk signature. In vitro experiments verified that the m6A-associated lncRNAs was abnormally expressed in glioma. Conclusion: We elaborated the significant role of m6A-connected lncRNAs in glioma prognosis and immune infiltration and suggest that these key regulators may serve as underlying therapeutic targets to build up the efficacy of glioma immunotherapy.
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spelling pubmed-101702992023-05-11 N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients Wu, Wei Jun Xiao, Feng Xiong, Yaping Sun, Gu Feng Guo, Yun Zhou, Xiang Hu, Guo Wen Huang, Kai Guo, Hua Biosci Rep Bioinformatics Background: The connection between m6A-assiociateed lncRNAs and prognosis has been demonstrated in multiple types of tumors. However, potential roles of m6A-assiociateed lncRNAs in glioma is still rare. Methods: We implemented consensus cluster analysis to group the downloaded samples into two subtypes. The least absolute shrinkage and selection operator (LASSO) analysis was used to create a risk model. Additionally, the conjunction between m6A-related lncRNAs and immune cells infiltration was explored by conducting the R package. Ultimately, we inspected the underlying downstream pathways of the two subtypes by performing Gene Set Enrichment Analysis (GSEA). The expression level of m6A-connected lncRNAs in glioma were examined by conducting in vitro experiments. Results: We ascertained two subtypes of glioma in line with the consensus clustering of m6A-associated lncRNAs. We confirmed that age, grade, and IDH are related to the two subtypes. Additionally, the immune cells infiltration and immune checkpoint molecules of the two clusters were discussed. A risk signature including AL359643.3, AL445524.1, AL162231.2, AL117332.1, AP001486.2, POLR2J4, AC120036.4, LINC00641, LINC00900, CRNDE, and AL158212.3, was identified using the Cox regression and LASSO analyses. We also verified the prognostic value and discussed the immune cells infiltration and immune checkpoint molecules of the risk signature. In vitro experiments verified that the m6A-associated lncRNAs was abnormally expressed in glioma. Conclusion: We elaborated the significant role of m6A-connected lncRNAs in glioma prognosis and immune infiltration and suggest that these key regulators may serve as underlying therapeutic targets to build up the efficacy of glioma immunotherapy. Portland Press Ltd. 2023-05-05 /pmc/articles/PMC10170299/ /pubmed/37083719 http://dx.doi.org/10.1042/BSR20222100 Text en © 2023 The Author(s). https://creativecommons.org/licenses/by/4.0/This is an open access article published by Portland Press Limited on behalf of the Biochemical Society and distributed under the Creative Commons Attribution License 4.0 (CC BY) (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Bioinformatics
Wu, Wei Jun
Xiao, Feng
Xiong, Yaping
Sun, Gu Feng
Guo, Yun
Zhou, Xiang
Hu, Guo Wen
Huang, Kai
Guo, Hua
N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title_full N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title_fullStr N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title_full_unstemmed N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title_short N6-methyladenosine (m6A)-connected lncRNAs are linked to survival and immune infiltration in glioma patients
title_sort n6-methyladenosine (m6a)-connected lncrnas are linked to survival and immune infiltration in glioma patients
topic Bioinformatics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170299/
https://www.ncbi.nlm.nih.gov/pubmed/37083719
http://dx.doi.org/10.1042/BSR20222100
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