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Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network
After several waves of COVID-19 led to a massive loss of human life worldwide due to the changes in its variants and the vast explosion. Several researchers proposed neural network-based drug discovery techniques to fight against the pandemic; utilizing neural networks has limitations (Exponential t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170456/ https://www.ncbi.nlm.nih.gov/pubmed/37362739 http://dx.doi.org/10.1007/s11042-023-15270-8 |
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author | Pati, Soumen Kumar Gupta, Manan Kumar Banerjee, Ayan Shai, Rinita Shivakumara, Palaiahnakote |
author_facet | Pati, Soumen Kumar Gupta, Manan Kumar Banerjee, Ayan Shai, Rinita Shivakumara, Palaiahnakote |
author_sort | Pati, Soumen Kumar |
collection | PubMed |
description | After several waves of COVID-19 led to a massive loss of human life worldwide due to the changes in its variants and the vast explosion. Several researchers proposed neural network-based drug discovery techniques to fight against the pandemic; utilizing neural networks has limitations (Exponential time complexity, Non-Convergence, Mode Collapse, and Diminished Gradient). To overcome those difficulties, this paper proposed a hybrid architecture that will help to repurpose the most appropriate medicines for the treatment of COVID-19. A brief investigation of the sequences has been made to discover the gene density and noncoding proportion through the next gene sequencing. The paper tracks the exceptional locales in the virus DNA sequence as a Drug Target Region (DTR). Then the variable DNA neighborhood search is applied to this DTR to obtain the DNA interaction network to show how the genes are correlated. A drug database has been obtained based on the ontological property of the genomes with advanced D3Similarity so that all the chemical components of the drug database have been identified. Other methods obtained hydroxychloroquine as an effective drug which was rejected by WHO. However, The experimental results show that Remdesivir and Dexamethasone are the most effective drugs, with 97.41 and 97.93%, respectively. |
format | Online Article Text |
id | pubmed-10170456 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-101704562023-05-11 Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network Pati, Soumen Kumar Gupta, Manan Kumar Banerjee, Ayan Shai, Rinita Shivakumara, Palaiahnakote Multimed Tools Appl Article After several waves of COVID-19 led to a massive loss of human life worldwide due to the changes in its variants and the vast explosion. Several researchers proposed neural network-based drug discovery techniques to fight against the pandemic; utilizing neural networks has limitations (Exponential time complexity, Non-Convergence, Mode Collapse, and Diminished Gradient). To overcome those difficulties, this paper proposed a hybrid architecture that will help to repurpose the most appropriate medicines for the treatment of COVID-19. A brief investigation of the sequences has been made to discover the gene density and noncoding proportion through the next gene sequencing. The paper tracks the exceptional locales in the virus DNA sequence as a Drug Target Region (DTR). Then the variable DNA neighborhood search is applied to this DTR to obtain the DNA interaction network to show how the genes are correlated. A drug database has been obtained based on the ontological property of the genomes with advanced D3Similarity so that all the chemical components of the drug database have been identified. Other methods obtained hydroxychloroquine as an effective drug which was rejected by WHO. However, The experimental results show that Remdesivir and Dexamethasone are the most effective drugs, with 97.41 and 97.93%, respectively. Springer US 2023-05-10 /pmc/articles/PMC10170456/ /pubmed/37362739 http://dx.doi.org/10.1007/s11042-023-15270-8 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023, Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Article Pati, Soumen Kumar Gupta, Manan Kumar Banerjee, Ayan Shai, Rinita Shivakumara, Palaiahnakote Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title | Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title_full | Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title_fullStr | Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title_full_unstemmed | Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title_short | Drug discovery through Covid-19 genome sequencing with siamese graph convolutional neural network |
title_sort | drug discovery through covid-19 genome sequencing with siamese graph convolutional neural network |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170456/ https://www.ncbi.nlm.nih.gov/pubmed/37362739 http://dx.doi.org/10.1007/s11042-023-15270-8 |
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