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Does a Machine-Learned Potential Perform Better Than an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins
[Image: see text] We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical Society
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170518/ https://www.ncbi.nlm.nih.gov/pubmed/37071825 http://dx.doi.org/10.1021/acs.jcim.2c01510 |
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author | Morado, João Mortenson, Paul N. Nissink, J. Willem M. Essex, Jonathan W. Skylaris, Chris-Kriton |
author_facet | Morado, João Mortenson, Paul N. Nissink, J. Willem M. Essex, Jonathan W. Skylaris, Chris-Kriton |
author_sort | Morado, João |
collection | PubMed |
description | [Image: see text] We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and intermolecular interactions in determining conformer stability. To benchmark the performance of each molecular model, we evaluated their energetic, geometric, and sampling accuracies relative to quantum-mechanical data. This benchmark involved conformational analysis both in the gas phase and chloroform solution. We also assessed the performance of the aforementioned molecular models in estimating nuclear spin–spin coupling constants by comparing their predictions to experimental data available in chloroform. The results and discussion presented in this study demonstrate that ANI-2x tends to predict stronger-than-expected hydrogen bonding and overstabilize global minima and shows problems related to inadequate description of dispersion interactions. Furthermore, while ANI-2x is a viable model for modeling in the gas phase, conventional force fields still play an important role, especially for condensed-phase simulations. Overall, this study highlights the strengths and weaknesses of each model, providing guidelines for the use and future development of force fields and machine learning potentials. |
format | Online Article Text |
id | pubmed-10170518 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | American Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-101705182023-05-11 Does a Machine-Learned Potential Perform Better Than an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins Morado, João Mortenson, Paul N. Nissink, J. Willem M. Essex, Jonathan W. Skylaris, Chris-Kriton J Chem Inf Model [Image: see text] We present a comparative study that evaluates the performance of a machine learning potential (ANI-2x), a conventional force field (GAFF), and an optimally tuned GAFF-like force field in the modeling of a set of 10 γ-fluorohydrins that exhibit a complex interplay between intra- and intermolecular interactions in determining conformer stability. To benchmark the performance of each molecular model, we evaluated their energetic, geometric, and sampling accuracies relative to quantum-mechanical data. This benchmark involved conformational analysis both in the gas phase and chloroform solution. We also assessed the performance of the aforementioned molecular models in estimating nuclear spin–spin coupling constants by comparing their predictions to experimental data available in chloroform. The results and discussion presented in this study demonstrate that ANI-2x tends to predict stronger-than-expected hydrogen bonding and overstabilize global minima and shows problems related to inadequate description of dispersion interactions. Furthermore, while ANI-2x is a viable model for modeling in the gas phase, conventional force fields still play an important role, especially for condensed-phase simulations. Overall, this study highlights the strengths and weaknesses of each model, providing guidelines for the use and future development of force fields and machine learning potentials. American Chemical Society 2023-04-18 /pmc/articles/PMC10170518/ /pubmed/37071825 http://dx.doi.org/10.1021/acs.jcim.2c01510 Text en © 2023 The Authors. Published by American Chemical Society https://creativecommons.org/licenses/by/4.0/Permits the broadest form of re-use including for commercial purposes, provided that author attribution and integrity are maintained (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Morado, João Mortenson, Paul N. Nissink, J. Willem M. Essex, Jonathan W. Skylaris, Chris-Kriton Does a Machine-Learned Potential Perform Better Than an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title | Does a Machine-Learned Potential Perform Better Than
an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title_full | Does a Machine-Learned Potential Perform Better Than
an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title_fullStr | Does a Machine-Learned Potential Perform Better Than
an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title_full_unstemmed | Does a Machine-Learned Potential Perform Better Than
an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title_short | Does a Machine-Learned Potential Perform Better Than
an Optimally Tuned Traditional Force Field? A Case Study on Fluorohydrins |
title_sort | does a machine-learned potential perform better than
an optimally tuned traditional force field? a case study on fluorohydrins |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10170518/ https://www.ncbi.nlm.nih.gov/pubmed/37071825 http://dx.doi.org/10.1021/acs.jcim.2c01510 |
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