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Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning

Most fMRI inferences are based on analyzing the scans of a cohort. Thus, the individual variability of a subject is often overlooked in these studies. Recently, there has been a growing interest in individual differences in brain connectivity also known as individual connectome. Various studies have...

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Autores principales: Jain, Pratik, Chakraborty, Ankit, Hafiz, Rakibul, Sao, Anil K., Biswal, Bharat
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley & Sons, Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10171559/
https://www.ncbi.nlm.nih.gov/pubmed/37070786
http://dx.doi.org/10.1002/hbm.26289
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author Jain, Pratik
Chakraborty, Ankit
Hafiz, Rakibul
Sao, Anil K.
Biswal, Bharat
author_facet Jain, Pratik
Chakraborty, Ankit
Hafiz, Rakibul
Sao, Anil K.
Biswal, Bharat
author_sort Jain, Pratik
collection PubMed
description Most fMRI inferences are based on analyzing the scans of a cohort. Thus, the individual variability of a subject is often overlooked in these studies. Recently, there has been a growing interest in individual differences in brain connectivity also known as individual connectome. Various studies have demonstrated the individual specific component of functional connectivity (FC), which has enormous potential to identify participants across consecutive testing sessions. Many machine learning and dictionary learning‐based approaches have been used to extract these subject‐specific components either from the blood oxygen level dependent (BOLD) signal or from the FC. In addition, several studies have reported that some resting‐state networks have more individual‐specific information than others. This study compares four different dictionary‐learning algorithms that compute the individual variability from the network‐specific FC computed from resting‐state functional Magnetic Resonance Imaging (rs‐fMRI) data having 10 scans per subject. The study also compares the effect of two FC normalization techniques, namely, Fisher Z normalization and degree normalization on the extracted subject‐specific components. To quantitatively evaluate the extracted subject‐specific component, a metric named [Formula: see text] is proposed, and it is used in combination with the existing differential identifiability [Formula: see text] metric. It is based on the hypothesis that the subject‐specific FC vectors should be similar within the same subject and different across different subjects. Results indicate that Fisher Z transformed subject‐specific fronto‐parietal and default mode network extracted using Common Orthogonal Basis Extraction (COBE) dictionary learning have the best features to identify a participant.
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spelling pubmed-101715592023-05-11 Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning Jain, Pratik Chakraborty, Ankit Hafiz, Rakibul Sao, Anil K. Biswal, Bharat Hum Brain Mapp Research Articles Most fMRI inferences are based on analyzing the scans of a cohort. Thus, the individual variability of a subject is often overlooked in these studies. Recently, there has been a growing interest in individual differences in brain connectivity also known as individual connectome. Various studies have demonstrated the individual specific component of functional connectivity (FC), which has enormous potential to identify participants across consecutive testing sessions. Many machine learning and dictionary learning‐based approaches have been used to extract these subject‐specific components either from the blood oxygen level dependent (BOLD) signal or from the FC. In addition, several studies have reported that some resting‐state networks have more individual‐specific information than others. This study compares four different dictionary‐learning algorithms that compute the individual variability from the network‐specific FC computed from resting‐state functional Magnetic Resonance Imaging (rs‐fMRI) data having 10 scans per subject. The study also compares the effect of two FC normalization techniques, namely, Fisher Z normalization and degree normalization on the extracted subject‐specific components. To quantitatively evaluate the extracted subject‐specific component, a metric named [Formula: see text] is proposed, and it is used in combination with the existing differential identifiability [Formula: see text] metric. It is based on the hypothesis that the subject‐specific FC vectors should be similar within the same subject and different across different subjects. Results indicate that Fisher Z transformed subject‐specific fronto‐parietal and default mode network extracted using Common Orthogonal Basis Extraction (COBE) dictionary learning have the best features to identify a participant. John Wiley & Sons, Inc. 2023-04-18 /pmc/articles/PMC10171559/ /pubmed/37070786 http://dx.doi.org/10.1002/hbm.26289 Text en © 2023 The Authors. Human Brain Mapping published by Wiley Periodicals LLC. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Jain, Pratik
Chakraborty, Ankit
Hafiz, Rakibul
Sao, Anil K.
Biswal, Bharat
Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title_full Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title_fullStr Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title_full_unstemmed Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title_short Enhancing the network specific individual characteristics in rs‐fMRI functional connectivity by dictionary learning
title_sort enhancing the network specific individual characteristics in rs‐fmri functional connectivity by dictionary learning
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10171559/
https://www.ncbi.nlm.nih.gov/pubmed/37070786
http://dx.doi.org/10.1002/hbm.26289
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