Cargando…

Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves

Drought is a major factor that limiting mung bean development. To clarify the molecular mechanism of mung bean in response to drought stress, 2 mung bean groups were established, the experimental group (drought-treated) and the control group (normal water management). With prominent difference of 2...

Descripción completa

Detalles Bibliográficos
Autores principales: Guo, Yaning, Zhang, Siyu, Ai, Jing, Zhang, Panpan, Yao, Han, Liu, Yunfei, Zhang, Xiong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10171660/
https://www.ncbi.nlm.nih.gov/pubmed/37163521
http://dx.doi.org/10.1371/journal.pone.0285400
_version_ 1785039469470023680
author Guo, Yaning
Zhang, Siyu
Ai, Jing
Zhang, Panpan
Yao, Han
Liu, Yunfei
Zhang, Xiong
author_facet Guo, Yaning
Zhang, Siyu
Ai, Jing
Zhang, Panpan
Yao, Han
Liu, Yunfei
Zhang, Xiong
author_sort Guo, Yaning
collection PubMed
description Drought is a major factor that limiting mung bean development. To clarify the molecular mechanism of mung bean in response to drought stress, 2 mung bean groups were established, the experimental group (drought-treated) and the control group (normal water management). With prominent difference of 2 groups in stomatal conductance, relative water content and phenotype, leaf samples were collected at 4 stages, and the physiological index of MDA, POD, chlorophyll, and soluble proteins were estimated. RNA-seq was used to obtain high quality data of samples, and differentially expressed genes were identified by DESeq2. With GO and KEGG analysis, DEGs were enriched into different classifications and pathways. WGCNA was used to detect the relationship between physiological traits and genes, and qPCR was performed to confirm the accuracy of the data. We obtained 169.49 Gb of clean data from 24 samples, and the Q30 of each date all exceeded 94%. In total, 8963 DEGs were identified at 4 stages between the control and treated samples, and the DEGs were involved in most biological processes. 1270 TFs screened from DEGs were clustered into 158 TF families, such as AP2, RLK-Pelle-DLSVA, and NAC TF families. Genes related to physiological traits were closely related to plant hormone signaling, carotenoid biosynthesis, chlorophyll metabolism, and protein processing. This paper provides a large amount of data for drought research in mung bean.
format Online
Article
Text
id pubmed-10171660
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-101716602023-05-11 Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves Guo, Yaning Zhang, Siyu Ai, Jing Zhang, Panpan Yao, Han Liu, Yunfei Zhang, Xiong PLoS One Research Article Drought is a major factor that limiting mung bean development. To clarify the molecular mechanism of mung bean in response to drought stress, 2 mung bean groups were established, the experimental group (drought-treated) and the control group (normal water management). With prominent difference of 2 groups in stomatal conductance, relative water content and phenotype, leaf samples were collected at 4 stages, and the physiological index of MDA, POD, chlorophyll, and soluble proteins were estimated. RNA-seq was used to obtain high quality data of samples, and differentially expressed genes were identified by DESeq2. With GO and KEGG analysis, DEGs were enriched into different classifications and pathways. WGCNA was used to detect the relationship between physiological traits and genes, and qPCR was performed to confirm the accuracy of the data. We obtained 169.49 Gb of clean data from 24 samples, and the Q30 of each date all exceeded 94%. In total, 8963 DEGs were identified at 4 stages between the control and treated samples, and the DEGs were involved in most biological processes. 1270 TFs screened from DEGs were clustered into 158 TF families, such as AP2, RLK-Pelle-DLSVA, and NAC TF families. Genes related to physiological traits were closely related to plant hormone signaling, carotenoid biosynthesis, chlorophyll metabolism, and protein processing. This paper provides a large amount of data for drought research in mung bean. Public Library of Science 2023-05-10 /pmc/articles/PMC10171660/ /pubmed/37163521 http://dx.doi.org/10.1371/journal.pone.0285400 Text en © 2023 Guo et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Guo, Yaning
Zhang, Siyu
Ai, Jing
Zhang, Panpan
Yao, Han
Liu, Yunfei
Zhang, Xiong
Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title_full Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title_fullStr Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title_full_unstemmed Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title_short Transcriptomic and biochemical analyses of drought response mechanism in mung bean (Vignaradiata (L.) Wilczek) leaves
title_sort transcriptomic and biochemical analyses of drought response mechanism in mung bean (vignaradiata (l.) wilczek) leaves
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10171660/
https://www.ncbi.nlm.nih.gov/pubmed/37163521
http://dx.doi.org/10.1371/journal.pone.0285400
work_keys_str_mv AT guoyaning transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT zhangsiyu transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT aijing transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT zhangpanpan transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT yaohan transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT liuyunfei transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves
AT zhangxiong transcriptomicandbiochemicalanalysesofdroughtresponsemechanisminmungbeanvignaradiatalwilczekleaves