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Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutiona...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172370/ https://www.ncbi.nlm.nih.gov/pubmed/37165035 http://dx.doi.org/10.1038/s41598-023-34439-7 |
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author | Kucukkaya, Ahmet Said Zeevi, Tal Chai, Nathan Xianming Raju, Rajiv Haider, Stefan Philipp Elbanan, Mohamed Petukhova-Greenstein, Alexandra Lin, MingDe Onofrey, John Nowak, Michal Cooper, Kirsten Thomas, Elizabeth Santana, Jessica Gebauer, Bernhard Mulligan, David Staib, Lawrence Batra, Ramesh Chapiro, Julius |
author_facet | Kucukkaya, Ahmet Said Zeevi, Tal Chai, Nathan Xianming Raju, Rajiv Haider, Stefan Philipp Elbanan, Mohamed Petukhova-Greenstein, Alexandra Lin, MingDe Onofrey, John Nowak, Michal Cooper, Kirsten Thomas, Elizabeth Santana, Jessica Gebauer, Bernhard Mulligan, David Staib, Lawrence Batra, Ramesh Chapiro, Julius |
author_sort | Kucukkaya, Ahmet Said |
collection | PubMed |
description | Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutional neural networks (CNN) to predict HCC recurrence in patients with early-stage HCC from pre-treatment magnetic resonance (MR) images. This retrospective study included 120 patients with early-stage HCC. Pre-treatment MR images were fed into a machine learning pipeline (VGG16 and XGBoost) to predict recurrence within six different time frames (range 1–6 years). Model performance was evaluated with the area under the receiver operating characteristic curves (AUC–ROC). After prediction, the model’s clinical relevance was evaluated using Kaplan–Meier analysis with recurrence-free survival (RFS) as the endpoint. Of 120 patients, 44 had disease recurrence after therapy. Six different models performed with AUC values between 0.71 to 0.85. In Kaplan–Meier analysis, five of six models obtained statistical significance when predicting RFS (log-rank p < 0.05). Our proof-of-concept study indicates that deep learning algorithms can be utilized to predict early-stage HCC recurrence. Successful identification of high-risk recurrence candidates may help optimize follow-up imaging and improve long-term outcomes post-treatment. |
format | Online Article Text |
id | pubmed-10172370 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-101723702023-05-12 Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning Kucukkaya, Ahmet Said Zeevi, Tal Chai, Nathan Xianming Raju, Rajiv Haider, Stefan Philipp Elbanan, Mohamed Petukhova-Greenstein, Alexandra Lin, MingDe Onofrey, John Nowak, Michal Cooper, Kirsten Thomas, Elizabeth Santana, Jessica Gebauer, Bernhard Mulligan, David Staib, Lawrence Batra, Ramesh Chapiro, Julius Sci Rep Article Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutional neural networks (CNN) to predict HCC recurrence in patients with early-stage HCC from pre-treatment magnetic resonance (MR) images. This retrospective study included 120 patients with early-stage HCC. Pre-treatment MR images were fed into a machine learning pipeline (VGG16 and XGBoost) to predict recurrence within six different time frames (range 1–6 years). Model performance was evaluated with the area under the receiver operating characteristic curves (AUC–ROC). After prediction, the model’s clinical relevance was evaluated using Kaplan–Meier analysis with recurrence-free survival (RFS) as the endpoint. Of 120 patients, 44 had disease recurrence after therapy. Six different models performed with AUC values between 0.71 to 0.85. In Kaplan–Meier analysis, five of six models obtained statistical significance when predicting RFS (log-rank p < 0.05). Our proof-of-concept study indicates that deep learning algorithms can be utilized to predict early-stage HCC recurrence. Successful identification of high-risk recurrence candidates may help optimize follow-up imaging and improve long-term outcomes post-treatment. Nature Publishing Group UK 2023-05-10 /pmc/articles/PMC10172370/ /pubmed/37165035 http://dx.doi.org/10.1038/s41598-023-34439-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Kucukkaya, Ahmet Said Zeevi, Tal Chai, Nathan Xianming Raju, Rajiv Haider, Stefan Philipp Elbanan, Mohamed Petukhova-Greenstein, Alexandra Lin, MingDe Onofrey, John Nowak, Michal Cooper, Kirsten Thomas, Elizabeth Santana, Jessica Gebauer, Bernhard Mulligan, David Staib, Lawrence Batra, Ramesh Chapiro, Julius Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title | Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title_full | Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title_fullStr | Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title_full_unstemmed | Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title_short | Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
title_sort | predicting tumor recurrence on baseline mr imaging in patients with early-stage hepatocellular carcinoma using deep machine learning |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172370/ https://www.ncbi.nlm.nih.gov/pubmed/37165035 http://dx.doi.org/10.1038/s41598-023-34439-7 |
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