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Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning

Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutiona...

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Autores principales: Kucukkaya, Ahmet Said, Zeevi, Tal, Chai, Nathan Xianming, Raju, Rajiv, Haider, Stefan Philipp, Elbanan, Mohamed, Petukhova-Greenstein, Alexandra, Lin, MingDe, Onofrey, John, Nowak, Michal, Cooper, Kirsten, Thomas, Elizabeth, Santana, Jessica, Gebauer, Bernhard, Mulligan, David, Staib, Lawrence, Batra, Ramesh, Chapiro, Julius
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172370/
https://www.ncbi.nlm.nih.gov/pubmed/37165035
http://dx.doi.org/10.1038/s41598-023-34439-7
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author Kucukkaya, Ahmet Said
Zeevi, Tal
Chai, Nathan Xianming
Raju, Rajiv
Haider, Stefan Philipp
Elbanan, Mohamed
Petukhova-Greenstein, Alexandra
Lin, MingDe
Onofrey, John
Nowak, Michal
Cooper, Kirsten
Thomas, Elizabeth
Santana, Jessica
Gebauer, Bernhard
Mulligan, David
Staib, Lawrence
Batra, Ramesh
Chapiro, Julius
author_facet Kucukkaya, Ahmet Said
Zeevi, Tal
Chai, Nathan Xianming
Raju, Rajiv
Haider, Stefan Philipp
Elbanan, Mohamed
Petukhova-Greenstein, Alexandra
Lin, MingDe
Onofrey, John
Nowak, Michal
Cooper, Kirsten
Thomas, Elizabeth
Santana, Jessica
Gebauer, Bernhard
Mulligan, David
Staib, Lawrence
Batra, Ramesh
Chapiro, Julius
author_sort Kucukkaya, Ahmet Said
collection PubMed
description Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutional neural networks (CNN) to predict HCC recurrence in patients with early-stage HCC from pre-treatment magnetic resonance (MR) images. This retrospective study included 120 patients with early-stage HCC. Pre-treatment MR images were fed into a machine learning pipeline (VGG16 and XGBoost) to predict recurrence within six different time frames (range 1–6 years). Model performance was evaluated with the area under the receiver operating characteristic curves (AUC–ROC). After prediction, the model’s clinical relevance was evaluated using Kaplan–Meier analysis with recurrence-free survival (RFS) as the endpoint. Of 120 patients, 44 had disease recurrence after therapy. Six different models performed with AUC values between 0.71 to 0.85. In Kaplan–Meier analysis, five of six models obtained statistical significance when predicting RFS (log-rank p < 0.05). Our proof-of-concept study indicates that deep learning algorithms can be utilized to predict early-stage HCC recurrence. Successful identification of high-risk recurrence candidates may help optimize follow-up imaging and improve long-term outcomes post-treatment.
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spelling pubmed-101723702023-05-12 Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning Kucukkaya, Ahmet Said Zeevi, Tal Chai, Nathan Xianming Raju, Rajiv Haider, Stefan Philipp Elbanan, Mohamed Petukhova-Greenstein, Alexandra Lin, MingDe Onofrey, John Nowak, Michal Cooper, Kirsten Thomas, Elizabeth Santana, Jessica Gebauer, Bernhard Mulligan, David Staib, Lawrence Batra, Ramesh Chapiro, Julius Sci Rep Article Tumor recurrence affects up to 70% of early-stage hepatocellular carcinoma (HCC) patients, depending on treatment option. Deep learning algorithms allow in-depth exploration of imaging data to discover imaging features that may be predictive of recurrence. This study explored the use of convolutional neural networks (CNN) to predict HCC recurrence in patients with early-stage HCC from pre-treatment magnetic resonance (MR) images. This retrospective study included 120 patients with early-stage HCC. Pre-treatment MR images were fed into a machine learning pipeline (VGG16 and XGBoost) to predict recurrence within six different time frames (range 1–6 years). Model performance was evaluated with the area under the receiver operating characteristic curves (AUC–ROC). After prediction, the model’s clinical relevance was evaluated using Kaplan–Meier analysis with recurrence-free survival (RFS) as the endpoint. Of 120 patients, 44 had disease recurrence after therapy. Six different models performed with AUC values between 0.71 to 0.85. In Kaplan–Meier analysis, five of six models obtained statistical significance when predicting RFS (log-rank p < 0.05). Our proof-of-concept study indicates that deep learning algorithms can be utilized to predict early-stage HCC recurrence. Successful identification of high-risk recurrence candidates may help optimize follow-up imaging and improve long-term outcomes post-treatment. Nature Publishing Group UK 2023-05-10 /pmc/articles/PMC10172370/ /pubmed/37165035 http://dx.doi.org/10.1038/s41598-023-34439-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kucukkaya, Ahmet Said
Zeevi, Tal
Chai, Nathan Xianming
Raju, Rajiv
Haider, Stefan Philipp
Elbanan, Mohamed
Petukhova-Greenstein, Alexandra
Lin, MingDe
Onofrey, John
Nowak, Michal
Cooper, Kirsten
Thomas, Elizabeth
Santana, Jessica
Gebauer, Bernhard
Mulligan, David
Staib, Lawrence
Batra, Ramesh
Chapiro, Julius
Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title_full Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title_fullStr Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title_full_unstemmed Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title_short Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
title_sort predicting tumor recurrence on baseline mr imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10172370/
https://www.ncbi.nlm.nih.gov/pubmed/37165035
http://dx.doi.org/10.1038/s41598-023-34439-7
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