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Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis

Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder caused by both environmental and genetic factors. However, its etiology and pathogenesis remain unclear. The purpose of this study was to establish an immune-related diagnostic model for ASD using bioinformatics methods and to i...

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Autores principales: Cao, Wenjun, Luo, Chenghan, Fan, Zhaohan, Lei, Mengyuan, Cheng, Xinru, Shi, Zanyang, Mao, Fengxia, Xu, Qianya, Fu, Zhaoqin, Zhang, Qian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Lippincott Williams & Wilkins 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10174422/
https://www.ncbi.nlm.nih.gov/pubmed/37171362
http://dx.doi.org/10.1097/MD.0000000000033340
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author Cao, Wenjun
Luo, Chenghan
Fan, Zhaohan
Lei, Mengyuan
Cheng, Xinru
Shi, Zanyang
Mao, Fengxia
Xu, Qianya
Fu, Zhaoqin
Zhang, Qian
author_facet Cao, Wenjun
Luo, Chenghan
Fan, Zhaohan
Lei, Mengyuan
Cheng, Xinru
Shi, Zanyang
Mao, Fengxia
Xu, Qianya
Fu, Zhaoqin
Zhang, Qian
author_sort Cao, Wenjun
collection PubMed
description Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder caused by both environmental and genetic factors. However, its etiology and pathogenesis remain unclear. The purpose of this study was to establish an immune-related diagnostic model for ASD using bioinformatics methods and to identify ASD biomarkers. Two ASD datasets, GSE18123 and GSE29691, were integrated into the gene expression Database to eliminate batch effects. 41 differentially expressed genes were identified by microarray data linear model (limma package). Based on the results of the immune infiltration analysis, we speculated that neutrophils, B cells naive, CD8+ T cells, and Tregs are potential core immune cells in ASD and participate in the occurrence of ASD. Finally, the differential genes and immune infiltration in ASD and non-ASD patients were compared, and the most relevant genes were selected to construct the first immune correlation prediction model of ASD. After the calculation, the model exhibited better accuracy. The calculations show that the model has good accuracy.
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spelling pubmed-101744222023-05-12 Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis Cao, Wenjun Luo, Chenghan Fan, Zhaohan Lei, Mengyuan Cheng, Xinru Shi, Zanyang Mao, Fengxia Xu, Qianya Fu, Zhaoqin Zhang, Qian Medicine (Baltimore) 6200 Autism spectrum disorder (ASD) is a complex neurodevelopmental disorder caused by both environmental and genetic factors. However, its etiology and pathogenesis remain unclear. The purpose of this study was to establish an immune-related diagnostic model for ASD using bioinformatics methods and to identify ASD biomarkers. Two ASD datasets, GSE18123 and GSE29691, were integrated into the gene expression Database to eliminate batch effects. 41 differentially expressed genes were identified by microarray data linear model (limma package). Based on the results of the immune infiltration analysis, we speculated that neutrophils, B cells naive, CD8+ T cells, and Tregs are potential core immune cells in ASD and participate in the occurrence of ASD. Finally, the differential genes and immune infiltration in ASD and non-ASD patients were compared, and the most relevant genes were selected to construct the first immune correlation prediction model of ASD. After the calculation, the model exhibited better accuracy. The calculations show that the model has good accuracy. Lippincott Williams & Wilkins 2023-05-12 /pmc/articles/PMC10174422/ /pubmed/37171362 http://dx.doi.org/10.1097/MD.0000000000033340 Text en Copyright © 2023 the Author(s). Published by Wolters Kluwer Health, Inc. https://creativecommons.org/licenses/by-nc/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution-Non Commercial License 4.0 (CCBY-NC) (https://creativecommons.org/licenses/by-nc/4.0/) , where it is permissible to download, share, remix, transform, and buildup the work provided it is properly cited. The work cannot be used commercially without permission from the journal.
spellingShingle 6200
Cao, Wenjun
Luo, Chenghan
Fan, Zhaohan
Lei, Mengyuan
Cheng, Xinru
Shi, Zanyang
Mao, Fengxia
Xu, Qianya
Fu, Zhaoqin
Zhang, Qian
Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title_full Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title_fullStr Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title_full_unstemmed Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title_short Analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
title_sort analysis of potential biomarkers and immune infiltration in autism based on bioinformatics analysis
topic 6200
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10174422/
https://www.ncbi.nlm.nih.gov/pubmed/37171362
http://dx.doi.org/10.1097/MD.0000000000033340
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