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Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator
Conventional approaches for screening anticancer drugs rely on chemical reactions, which are time consuming, labor intensive, and costly. Here, we present a protocol for label-free and high-throughput assessment of drug efficacy using a vision transformer and a Conv2D. We describe the steps for cell...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10176075/ https://www.ncbi.nlm.nih.gov/pubmed/37133992 http://dx.doi.org/10.1016/j.xpro.2023.102259 |
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author | Wang, Yongheng Zhang, Weidi Wu, Yi Qu, Chuyuan Hu, Hongru Lee, Teresa Lin, Siyu Zhang, Jiawei Lam, Kit S. Wang, Aijun |
author_facet | Wang, Yongheng Zhang, Weidi Wu, Yi Qu, Chuyuan Hu, Hongru Lee, Teresa Lin, Siyu Zhang, Jiawei Lam, Kit S. Wang, Aijun |
author_sort | Wang, Yongheng |
collection | PubMed |
description | Conventional approaches for screening anticancer drugs rely on chemical reactions, which are time consuming, labor intensive, and costly. Here, we present a protocol for label-free and high-throughput assessment of drug efficacy using a vision transformer and a Conv2D. We describe the steps for cell culture, drug treatment, data collection, and preprocessing. We then detail the building of deep learning models and their use to predict drug potency. This protocol can be adapted for screening chemicals that affect the density or morphological features of cells. For complete details on the use and execution of this protocol, please refer to Wang et al.(1) |
format | Online Article Text |
id | pubmed-10176075 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-101760752023-05-13 Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator Wang, Yongheng Zhang, Weidi Wu, Yi Qu, Chuyuan Hu, Hongru Lee, Teresa Lin, Siyu Zhang, Jiawei Lam, Kit S. Wang, Aijun STAR Protoc Protocol Conventional approaches for screening anticancer drugs rely on chemical reactions, which are time consuming, labor intensive, and costly. Here, we present a protocol for label-free and high-throughput assessment of drug efficacy using a vision transformer and a Conv2D. We describe the steps for cell culture, drug treatment, data collection, and preprocessing. We then detail the building of deep learning models and their use to predict drug potency. This protocol can be adapted for screening chemicals that affect the density or morphological features of cells. For complete details on the use and execution of this protocol, please refer to Wang et al.(1) Elsevier 2023-05-01 /pmc/articles/PMC10176075/ /pubmed/37133992 http://dx.doi.org/10.1016/j.xpro.2023.102259 Text en © 2023 The Authors https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Protocol Wang, Yongheng Zhang, Weidi Wu, Yi Qu, Chuyuan Hu, Hongru Lee, Teresa Lin, Siyu Zhang, Jiawei Lam, Kit S. Wang, Aijun Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title | Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title_full | Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title_fullStr | Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title_full_unstemmed | Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title_short | Protocol for vision transformer-based evaluation of drug potency using images processed by an optimized Sobel operator |
title_sort | protocol for vision transformer-based evaluation of drug potency using images processed by an optimized sobel operator |
topic | Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10176075/ https://www.ncbi.nlm.nih.gov/pubmed/37133992 http://dx.doi.org/10.1016/j.xpro.2023.102259 |
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