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Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving

The archiving of whole slide images represents a hurdle to digital pathology implementation largely because of the amount of data generated. The retention of glass slides is currently recommended for a minimum of 10 years, but it is for individual departments to determine how digital images are arch...

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Autores principales: Ali, Mahmoud, Evans, Harriet, Whitney, Peter, Minhas, Fayyaz, Snead, David R J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BMJ Publishing Group 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10176345/
https://www.ncbi.nlm.nih.gov/pubmed/36109157
http://dx.doi.org/10.1136/jcp-2022-208483
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author Ali, Mahmoud
Evans, Harriet
Whitney, Peter
Minhas, Fayyaz
Snead, David R J
author_facet Ali, Mahmoud
Evans, Harriet
Whitney, Peter
Minhas, Fayyaz
Snead, David R J
author_sort Ali, Mahmoud
collection PubMed
description The archiving of whole slide images represents a hurdle to digital pathology implementation largely because of the amount of data generated. The retention of glass slides is currently recommended for a minimum of 10 years, but it is for individual departments to determine how digital images are archived and for how long. In a retrospective study, we examined the combination of Systemised Nomenclature of Medicine (SNOMED) codes allocated to cases reported between July 2011 and December 2015 and recalled more than 12 months after diagnosis in comparison to non-recalled cases. Our results show that 0.2% of cases are recalled after 12 months, and SNOMED code combinations can be used to identify which cases are likely to be recalled and which are not. This approach could reduce the number of cases archived by 62% and still ensure all cases likely to be recalled remain in the archive.
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spelling pubmed-101763452023-05-13 Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving Ali, Mahmoud Evans, Harriet Whitney, Peter Minhas, Fayyaz Snead, David R J J Clin Pathol Short Report The archiving of whole slide images represents a hurdle to digital pathology implementation largely because of the amount of data generated. The retention of glass slides is currently recommended for a minimum of 10 years, but it is for individual departments to determine how digital images are archived and for how long. In a retrospective study, we examined the combination of Systemised Nomenclature of Medicine (SNOMED) codes allocated to cases reported between July 2011 and December 2015 and recalled more than 12 months after diagnosis in comparison to non-recalled cases. Our results show that 0.2% of cases are recalled after 12 months, and SNOMED code combinations can be used to identify which cases are likely to be recalled and which are not. This approach could reduce the number of cases archived by 62% and still ensure all cases likely to be recalled remain in the archive. BMJ Publishing Group 2023-05 2022-09-15 /pmc/articles/PMC10176345/ /pubmed/36109157 http://dx.doi.org/10.1136/jcp-2022-208483 Text en © Author(s) (or their employer(s)) 2023. Re-use permitted under CC BY-NC. No commercial re-use. See rights and permissions. Published by BMJ. https://creativecommons.org/licenses/by-nc/4.0/This is an open access article distributed in accordance with the Creative Commons Attribution Non Commercial (CC BY-NC 4.0) license, which permits others to distribute, remix, adapt, build upon this work non-commercially, and license their derivative works on different terms, provided the original work is properly cited, appropriate credit is given, any changes made indicated, and the use is non-commercial. See: http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) .
spellingShingle Short Report
Ali, Mahmoud
Evans, Harriet
Whitney, Peter
Minhas, Fayyaz
Snead, David R J
Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title_full Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title_fullStr Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title_full_unstemmed Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title_short Using Systemised Nomenclature of Medicine (SNOMED) codes to select digital pathology whole slide images for long-term archiving
title_sort using systemised nomenclature of medicine (snomed) codes to select digital pathology whole slide images for long-term archiving
topic Short Report
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10176345/
https://www.ncbi.nlm.nih.gov/pubmed/36109157
http://dx.doi.org/10.1136/jcp-2022-208483
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