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Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center
The set of TX(3)-TrX(2) (T = C, Si, Ge; Tr = B, Al, Ga; X = F, Cl, Br) molecules offers a rather unique opportunity to study both σ-hole and π-hole dimerization on the tetrel and triel ends, respectively. According to the molecular electrostatic potential (MEP) distribution, the π-hole extrema (acid...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10177972/ https://www.ncbi.nlm.nih.gov/pubmed/37175586 http://dx.doi.org/10.3390/ijms24097881 |
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author | Michalczyk, Mariusz Wojtkowiak, Kamil Panek, Jarosław J. Jezierska, Aneta Zierkiewicz, Wiktor |
author_facet | Michalczyk, Mariusz Wojtkowiak, Kamil Panek, Jarosław J. Jezierska, Aneta Zierkiewicz, Wiktor |
author_sort | Michalczyk, Mariusz |
collection | PubMed |
description | The set of TX(3)-TrX(2) (T = C, Si, Ge; Tr = B, Al, Ga; X = F, Cl, Br) molecules offers a rather unique opportunity to study both σ-hole and π-hole dimerization on the tetrel and triel ends, respectively. According to the molecular electrostatic potential (MEP) distribution, the π-hole extrema (acidic sites) were more intense than their σ-hole counterparts. The molecules owning the most (CX(3)-AlX(2)) and least (SiX(3)-BX(2)) intense π-holes were chosen to evaluate their capacities to attract one and two HCN molecules (Lewis bases). We discovered that the energetic characteristics of π-hole dimers severely conflict with the monomers MEP pattern since the weakest π-hole monomer forms a dimer characterized by interaction energy compared to those created by the monomers with noticeably greater power in the π-hole region. This outcome is due to the deformation of the weakest π-hole donor. Furthermore, the MEP analysis for monomers in the geometry of respective dimers revealed a “residual π-hole” site that was able to drive second ligand attachment, giving rise to the two “unusual trimers” examined further by the NCI and QTAIM analyses. Apart from them, the π-hole/π-hole and σ-hole/π-hole trimers have also been obtained throughout this study and described using energetic and geometric parameters. The SAPT approach revealed details of the bonding in one of the “unusual trimers”. Finally, Born-Oppenheimer Molecular Dynamics (BOMD) simulations were carried out to investigate the time evolution of the interatomic distances of the studied complexes as well as their stability. |
format | Online Article Text |
id | pubmed-10177972 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101779722023-05-13 Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center Michalczyk, Mariusz Wojtkowiak, Kamil Panek, Jarosław J. Jezierska, Aneta Zierkiewicz, Wiktor Int J Mol Sci Article The set of TX(3)-TrX(2) (T = C, Si, Ge; Tr = B, Al, Ga; X = F, Cl, Br) molecules offers a rather unique opportunity to study both σ-hole and π-hole dimerization on the tetrel and triel ends, respectively. According to the molecular electrostatic potential (MEP) distribution, the π-hole extrema (acidic sites) were more intense than their σ-hole counterparts. The molecules owning the most (CX(3)-AlX(2)) and least (SiX(3)-BX(2)) intense π-holes were chosen to evaluate their capacities to attract one and two HCN molecules (Lewis bases). We discovered that the energetic characteristics of π-hole dimers severely conflict with the monomers MEP pattern since the weakest π-hole monomer forms a dimer characterized by interaction energy compared to those created by the monomers with noticeably greater power in the π-hole region. This outcome is due to the deformation of the weakest π-hole donor. Furthermore, the MEP analysis for monomers in the geometry of respective dimers revealed a “residual π-hole” site that was able to drive second ligand attachment, giving rise to the two “unusual trimers” examined further by the NCI and QTAIM analyses. Apart from them, the π-hole/π-hole and σ-hole/π-hole trimers have also been obtained throughout this study and described using energetic and geometric parameters. The SAPT approach revealed details of the bonding in one of the “unusual trimers”. Finally, Born-Oppenheimer Molecular Dynamics (BOMD) simulations were carried out to investigate the time evolution of the interatomic distances of the studied complexes as well as their stability. MDPI 2023-04-26 /pmc/articles/PMC10177972/ /pubmed/37175586 http://dx.doi.org/10.3390/ijms24097881 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Michalczyk, Mariusz Wojtkowiak, Kamil Panek, Jarosław J. Jezierska, Aneta Zierkiewicz, Wiktor Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title | Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title_full | Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title_fullStr | Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title_full_unstemmed | Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title_short | Static and Dynamical Quantum Studies of CX(3)-AlX(2) and CSiX(3)-BX(2) (X = F, Cl, Br) Complexes with Hydrocyanic Acid: Unusual Behavior of Strong π-Hole at Triel Center |
title_sort | static and dynamical quantum studies of cx(3)-alx(2) and csix(3)-bx(2) (x = f, cl, br) complexes with hydrocyanic acid: unusual behavior of strong π-hole at triel center |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10177972/ https://www.ncbi.nlm.nih.gov/pubmed/37175586 http://dx.doi.org/10.3390/ijms24097881 |
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