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A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress
Phyllostachys edulis (moso bamboo) is China’s most widespread bamboo species, with significant economic and ecological values. Long non-coding RNA (lncRNA) is a type of regulatory RNA that is longer than 200 nucleotides and incapable of encoding proteins, and is frequently involved in regulating bio...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178214/ https://www.ncbi.nlm.nih.gov/pubmed/37187514 http://dx.doi.org/10.7717/peerj.15243 |
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author | Yu, Lu Ding, Yiqian Zhou, Mingbing |
author_facet | Yu, Lu Ding, Yiqian Zhou, Mingbing |
author_sort | Yu, Lu |
collection | PubMed |
description | Phyllostachys edulis (moso bamboo) is China’s most widespread bamboo species, with significant economic and ecological values. Long non-coding RNA (lncRNA) is a type of regulatory RNA that is longer than 200 nucleotides and incapable of encoding proteins, and is frequently involved in regulating biotic and abiotic stress and plant development. However, the biological functions of lncRNA in moso bamboo are unknown. In this study, a lncRNA (named PelncRNA1) differentially expressed following UV-B treatment was discovered in the whole transcriptome sequencing database of moso bamboo. The target genes were filtered and defined by correlation analysis of PelncRNA1 and gene expression pattern. The expression levels of PelncRNA1 and its target genes were verified using qRT-PCR. The results demonstrated that the expression levels of PelncRNA1 and its target genes increased during UV-B treatment. In Arabidopsis transgenic seedlings and moso bamboo protoplasts, PelncRNA1 was discovered to influence the expression of its target genes when overexpressed. In addition, transgenic Arabidopsis showed higher tolerance to UV-B stress. These results suggest that PelncRNA1 and its target genes are involved in the response of moso bamboo to UV-B stress. The novel findings would contribute to our understanding of how lncRNAs regulate the response to abiotic stresses in moso bamboo. |
format | Online Article Text |
id | pubmed-10178214 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-101782142023-05-13 A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress Yu, Lu Ding, Yiqian Zhou, Mingbing PeerJ Agricultural Science Phyllostachys edulis (moso bamboo) is China’s most widespread bamboo species, with significant economic and ecological values. Long non-coding RNA (lncRNA) is a type of regulatory RNA that is longer than 200 nucleotides and incapable of encoding proteins, and is frequently involved in regulating biotic and abiotic stress and plant development. However, the biological functions of lncRNA in moso bamboo are unknown. In this study, a lncRNA (named PelncRNA1) differentially expressed following UV-B treatment was discovered in the whole transcriptome sequencing database of moso bamboo. The target genes were filtered and defined by correlation analysis of PelncRNA1 and gene expression pattern. The expression levels of PelncRNA1 and its target genes were verified using qRT-PCR. The results demonstrated that the expression levels of PelncRNA1 and its target genes increased during UV-B treatment. In Arabidopsis transgenic seedlings and moso bamboo protoplasts, PelncRNA1 was discovered to influence the expression of its target genes when overexpressed. In addition, transgenic Arabidopsis showed higher tolerance to UV-B stress. These results suggest that PelncRNA1 and its target genes are involved in the response of moso bamboo to UV-B stress. The novel findings would contribute to our understanding of how lncRNAs regulate the response to abiotic stresses in moso bamboo. PeerJ Inc. 2023-05-09 /pmc/articles/PMC10178214/ /pubmed/37187514 http://dx.doi.org/10.7717/peerj.15243 Text en ©2023 Yu et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Agricultural Science Yu, Lu Ding, Yiqian Zhou, Mingbing A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title | A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title_full | A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title_fullStr | A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title_full_unstemmed | A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title_short | A long non-coding RNA PelncRNA1 is involved in Phyllostachys edulis response to UV-B stress |
title_sort | long non-coding rna pelncrna1 is involved in phyllostachys edulis response to uv-b stress |
topic | Agricultural Science |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178214/ https://www.ncbi.nlm.nih.gov/pubmed/37187514 http://dx.doi.org/10.7717/peerj.15243 |
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