Cargando…

Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley

In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex an...

Descripción completa

Detalles Bibliográficos
Autores principales: An, Bingzhuang, Cai, Haiya, Li, Bo, Zhang, Shuo, He, Yonggang, Wang, Rong, Jiao, Chunhai, Guo, Ying, Xu, Le, Xu, Yanhao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178440/
https://www.ncbi.nlm.nih.gov/pubmed/37175750
http://dx.doi.org/10.3390/ijms24098043
_version_ 1785040863229902848
author An, Bingzhuang
Cai, Haiya
Li, Bo
Zhang, Shuo
He, Yonggang
Wang, Rong
Jiao, Chunhai
Guo, Ying
Xu, Le
Xu, Yanhao
author_facet An, Bingzhuang
Cai, Haiya
Li, Bo
Zhang, Shuo
He, Yonggang
Wang, Rong
Jiao, Chunhai
Guo, Ying
Xu, Le
Xu, Yanhao
author_sort An, Bingzhuang
collection PubMed
description In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex and diverse, which is more conducive to the adaptation of plants to complex and variable environments. We also characterized the number of members, genetic similarity, and phylogeny of HMT and HDM families in barley using the barley pangenome and the Tibetan Lasa Goumang genome. The results showed that HMT and HDM were highly conserved in the domestication of barley, but there were some differences in the Lasa Goumang SDG subfamily. Expression analysis showed that HvHMTs and HvHDMs were highly expressed in specific tissues and had complex expression patterns under multiple stress treatments. In summary, the amplification and variation of HMT and HDM facilitate plant adaptation to complex terrestrial environments, while they are highly conserved in barley and play an important role in barley growth and development with abiotic stresses. In brief, our findings provide a novel perspective on the origin and evolutionary history of plant HvHMTs and HvHDMs, and lay a foundation for further investigation of their functions in barley.
format Online
Article
Text
id pubmed-10178440
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-101784402023-05-13 Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley An, Bingzhuang Cai, Haiya Li, Bo Zhang, Shuo He, Yonggang Wang, Rong Jiao, Chunhai Guo, Ying Xu, Le Xu, Yanhao Int J Mol Sci Article In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex and diverse, which is more conducive to the adaptation of plants to complex and variable environments. We also characterized the number of members, genetic similarity, and phylogeny of HMT and HDM families in barley using the barley pangenome and the Tibetan Lasa Goumang genome. The results showed that HMT and HDM were highly conserved in the domestication of barley, but there were some differences in the Lasa Goumang SDG subfamily. Expression analysis showed that HvHMTs and HvHDMs were highly expressed in specific tissues and had complex expression patterns under multiple stress treatments. In summary, the amplification and variation of HMT and HDM facilitate plant adaptation to complex terrestrial environments, while they are highly conserved in barley and play an important role in barley growth and development with abiotic stresses. In brief, our findings provide a novel perspective on the origin and evolutionary history of plant HvHMTs and HvHDMs, and lay a foundation for further investigation of their functions in barley. MDPI 2023-04-28 /pmc/articles/PMC10178440/ /pubmed/37175750 http://dx.doi.org/10.3390/ijms24098043 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
An, Bingzhuang
Cai, Haiya
Li, Bo
Zhang, Shuo
He, Yonggang
Wang, Rong
Jiao, Chunhai
Guo, Ying
Xu, Le
Xu, Yanhao
Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title_full Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title_fullStr Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title_full_unstemmed Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title_short Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
title_sort molecular evolution of histone methylation modification families in the plant kingdom and their genome-wide analysis in barley
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178440/
https://www.ncbi.nlm.nih.gov/pubmed/37175750
http://dx.doi.org/10.3390/ijms24098043
work_keys_str_mv AT anbingzhuang molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT caihaiya molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT libo molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT zhangshuo molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT heyonggang molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT wangrong molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT jiaochunhai molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT guoying molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT xule molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley
AT xuyanhao molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley