Cargando…
Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley
In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex an...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178440/ https://www.ncbi.nlm.nih.gov/pubmed/37175750 http://dx.doi.org/10.3390/ijms24098043 |
_version_ | 1785040863229902848 |
---|---|
author | An, Bingzhuang Cai, Haiya Li, Bo Zhang, Shuo He, Yonggang Wang, Rong Jiao, Chunhai Guo, Ying Xu, Le Xu, Yanhao |
author_facet | An, Bingzhuang Cai, Haiya Li, Bo Zhang, Shuo He, Yonggang Wang, Rong Jiao, Chunhai Guo, Ying Xu, Le Xu, Yanhao |
author_sort | An, Bingzhuang |
collection | PubMed |
description | In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex and diverse, which is more conducive to the adaptation of plants to complex and variable environments. We also characterized the number of members, genetic similarity, and phylogeny of HMT and HDM families in barley using the barley pangenome and the Tibetan Lasa Goumang genome. The results showed that HMT and HDM were highly conserved in the domestication of barley, but there were some differences in the Lasa Goumang SDG subfamily. Expression analysis showed that HvHMTs and HvHDMs were highly expressed in specific tissues and had complex expression patterns under multiple stress treatments. In summary, the amplification and variation of HMT and HDM facilitate plant adaptation to complex terrestrial environments, while they are highly conserved in barley and play an important role in barley growth and development with abiotic stresses. In brief, our findings provide a novel perspective on the origin and evolutionary history of plant HvHMTs and HvHDMs, and lay a foundation for further investigation of their functions in barley. |
format | Online Article Text |
id | pubmed-10178440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101784402023-05-13 Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley An, Bingzhuang Cai, Haiya Li, Bo Zhang, Shuo He, Yonggang Wang, Rong Jiao, Chunhai Guo, Ying Xu, Le Xu, Yanhao Int J Mol Sci Article In this study, based on the OneKP database and through comparative genetic analysis, we found that HMT and HDM may originate from Chromista and are highly conserved in green plants, and that during the evolution from algae to land plants, histone methylation modifications gradually became complex and diverse, which is more conducive to the adaptation of plants to complex and variable environments. We also characterized the number of members, genetic similarity, and phylogeny of HMT and HDM families in barley using the barley pangenome and the Tibetan Lasa Goumang genome. The results showed that HMT and HDM were highly conserved in the domestication of barley, but there were some differences in the Lasa Goumang SDG subfamily. Expression analysis showed that HvHMTs and HvHDMs were highly expressed in specific tissues and had complex expression patterns under multiple stress treatments. In summary, the amplification and variation of HMT and HDM facilitate plant adaptation to complex terrestrial environments, while they are highly conserved in barley and play an important role in barley growth and development with abiotic stresses. In brief, our findings provide a novel perspective on the origin and evolutionary history of plant HvHMTs and HvHDMs, and lay a foundation for further investigation of their functions in barley. MDPI 2023-04-28 /pmc/articles/PMC10178440/ /pubmed/37175750 http://dx.doi.org/10.3390/ijms24098043 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article An, Bingzhuang Cai, Haiya Li, Bo Zhang, Shuo He, Yonggang Wang, Rong Jiao, Chunhai Guo, Ying Xu, Le Xu, Yanhao Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title | Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title_full | Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title_fullStr | Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title_full_unstemmed | Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title_short | Molecular Evolution of Histone Methylation Modification Families in the Plant Kingdom and Their Genome-Wide Analysis in Barley |
title_sort | molecular evolution of histone methylation modification families in the plant kingdom and their genome-wide analysis in barley |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178440/ https://www.ncbi.nlm.nih.gov/pubmed/37175750 http://dx.doi.org/10.3390/ijms24098043 |
work_keys_str_mv | AT anbingzhuang molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT caihaiya molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT libo molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT zhangshuo molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT heyonggang molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT wangrong molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT jiaochunhai molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT guoying molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT xule molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley AT xuyanhao molecularevolutionofhistonemethylationmodificationfamiliesintheplantkingdomandtheirgenomewideanalysisinbarley |