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A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informativ...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178557/ https://www.ncbi.nlm.nih.gov/pubmed/37175012 http://dx.doi.org/10.3390/diagnostics13091621 |
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author | Houssein, Essam H. Hassan, Hager N. Samee, Nagwan Abdel Jamjoom, Mona M. |
author_facet | Houssein, Essam H. Hassan, Hager N. Samee, Nagwan Abdel Jamjoom, Mona M. |
author_sort | Houssein, Essam H. |
collection | PubMed |
description | It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informative. Therefore, selecting genes to study as a starting point for cancer classification is common practice. We offer a novel approach that combines the Runge Kutta optimizer (RUN) with a support vector machine (SVM) as the classifier to select the significant genes in the detection of cancer tissues. As a means of dealing with the high dimensionality that characterizes microarray datasets, the preprocessing stage of the ReliefF method is implemented. The proposed RUN–SVM approach is tested on binary-class microarray datasets (Breast2 and Prostate) and multi-class microarray datasets in order to assess its efficacy (i.e., Brain Tumor1, Brain Tumor2, Breast3, and Lung Cancer). Based on the experimental results obtained from analyzing six different cancer gene expression datasets, the proposed RUN–SVM approach was found to statistically beat the other competing algorithms due to its innovative search technique. |
format | Online Article Text |
id | pubmed-10178557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101785572023-05-13 A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification Houssein, Essam H. Hassan, Hager N. Samee, Nagwan Abdel Jamjoom, Mona M. Diagnostics (Basel) Article It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informative. Therefore, selecting genes to study as a starting point for cancer classification is common practice. We offer a novel approach that combines the Runge Kutta optimizer (RUN) with a support vector machine (SVM) as the classifier to select the significant genes in the detection of cancer tissues. As a means of dealing with the high dimensionality that characterizes microarray datasets, the preprocessing stage of the ReliefF method is implemented. The proposed RUN–SVM approach is tested on binary-class microarray datasets (Breast2 and Prostate) and multi-class microarray datasets in order to assess its efficacy (i.e., Brain Tumor1, Brain Tumor2, Breast3, and Lung Cancer). Based on the experimental results obtained from analyzing six different cancer gene expression datasets, the proposed RUN–SVM approach was found to statistically beat the other competing algorithms due to its innovative search technique. MDPI 2023-05-03 /pmc/articles/PMC10178557/ /pubmed/37175012 http://dx.doi.org/10.3390/diagnostics13091621 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Houssein, Essam H. Hassan, Hager N. Samee, Nagwan Abdel Jamjoom, Mona M. A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title | A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title_full | A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title_fullStr | A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title_full_unstemmed | A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title_short | A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification |
title_sort | novel hybrid runge kutta optimizer with support vector machine on gene expression data for cancer classification |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178557/ https://www.ncbi.nlm.nih.gov/pubmed/37175012 http://dx.doi.org/10.3390/diagnostics13091621 |
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