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A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification

It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informativ...

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Autores principales: Houssein, Essam H., Hassan, Hager N., Samee, Nagwan Abdel, Jamjoom, Mona M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178557/
https://www.ncbi.nlm.nih.gov/pubmed/37175012
http://dx.doi.org/10.3390/diagnostics13091621
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author Houssein, Essam H.
Hassan, Hager N.
Samee, Nagwan Abdel
Jamjoom, Mona M.
author_facet Houssein, Essam H.
Hassan, Hager N.
Samee, Nagwan Abdel
Jamjoom, Mona M.
author_sort Houssein, Essam H.
collection PubMed
description It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informative. Therefore, selecting genes to study as a starting point for cancer classification is common practice. We offer a novel approach that combines the Runge Kutta optimizer (RUN) with a support vector machine (SVM) as the classifier to select the significant genes in the detection of cancer tissues. As a means of dealing with the high dimensionality that characterizes microarray datasets, the preprocessing stage of the ReliefF method is implemented. The proposed RUN–SVM approach is tested on binary-class microarray datasets (Breast2 and Prostate) and multi-class microarray datasets in order to assess its efficacy (i.e., Brain Tumor1, Brain Tumor2, Breast3, and Lung Cancer). Based on the experimental results obtained from analyzing six different cancer gene expression datasets, the proposed RUN–SVM approach was found to statistically beat the other competing algorithms due to its innovative search technique.
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spelling pubmed-101785572023-05-13 A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification Houssein, Essam H. Hassan, Hager N. Samee, Nagwan Abdel Jamjoom, Mona M. Diagnostics (Basel) Article It is crucial to accurately categorize cancers using microarray data. Researchers have employed a variety of computational intelligence approaches to analyze gene expression data. It is believed that the most difficult part of the problem of cancer diagnosis is determining which genes are informative. Therefore, selecting genes to study as a starting point for cancer classification is common practice. We offer a novel approach that combines the Runge Kutta optimizer (RUN) with a support vector machine (SVM) as the classifier to select the significant genes in the detection of cancer tissues. As a means of dealing with the high dimensionality that characterizes microarray datasets, the preprocessing stage of the ReliefF method is implemented. The proposed RUN–SVM approach is tested on binary-class microarray datasets (Breast2 and Prostate) and multi-class microarray datasets in order to assess its efficacy (i.e., Brain Tumor1, Brain Tumor2, Breast3, and Lung Cancer). Based on the experimental results obtained from analyzing six different cancer gene expression datasets, the proposed RUN–SVM approach was found to statistically beat the other competing algorithms due to its innovative search technique. MDPI 2023-05-03 /pmc/articles/PMC10178557/ /pubmed/37175012 http://dx.doi.org/10.3390/diagnostics13091621 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Houssein, Essam H.
Hassan, Hager N.
Samee, Nagwan Abdel
Jamjoom, Mona M.
A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title_full A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title_fullStr A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title_full_unstemmed A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title_short A Novel Hybrid Runge Kutta Optimizer with Support Vector Machine on Gene Expression Data for Cancer Classification
title_sort novel hybrid runge kutta optimizer with support vector machine on gene expression data for cancer classification
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178557/
https://www.ncbi.nlm.nih.gov/pubmed/37175012
http://dx.doi.org/10.3390/diagnostics13091621
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