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An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer
Lung and colon cancers are among the leading causes of human mortality and morbidity. Early diagnostic work up of these diseases include radiography, ultrasound, magnetic resonance imaging, and computed tomography. Certain blood tumor markers for carcinoma lung and colon also aid in the diagnosis. D...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178684/ https://www.ncbi.nlm.nih.gov/pubmed/37174985 http://dx.doi.org/10.3390/diagnostics13091594 |
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author | Tummala, Sudhakar Kadry, Seifedine Nadeem, Ahmed Rauf, Hafiz Tayyab Gul, Nadia |
author_facet | Tummala, Sudhakar Kadry, Seifedine Nadeem, Ahmed Rauf, Hafiz Tayyab Gul, Nadia |
author_sort | Tummala, Sudhakar |
collection | PubMed |
description | Lung and colon cancers are among the leading causes of human mortality and morbidity. Early diagnostic work up of these diseases include radiography, ultrasound, magnetic resonance imaging, and computed tomography. Certain blood tumor markers for carcinoma lung and colon also aid in the diagnosis. Despite the lab and diagnostic imaging, histopathology remains the gold standard, which provides cell-level images of tissue under examination. To read these images, a histopathologist spends a large amount of time. Furthermore, using conventional diagnostic methods involve high-end equipment as well. This leads to limited number of patients getting final diagnosis and early treatment. In addition, there are chances of inter-observer errors. In recent years, deep learning has shown promising results in the medical field. This has helped in early diagnosis and treatment according to severity of disease. With the help of EffcientNetV2 models that have been cross-validated and tested fivefold, we propose an automated method for detecting lung (lung adenocarcinoma, lung benign, and lung squamous cell carcinoma) and colon (colon adenocarcinoma and colon benign) cancer subtypes from LC25000 histopathology images. A state-of-the-art deep learning architecture based on the principles of compound scaling and progressive learning, EffcientNetV2 large, medium, and small models. An accuracy of 99.97%, AUC of 99.99%, F1-score of 99.97%, balanced accuracy of 99.97%, and Matthew’s correlation coefficient of 99.96% were obtained on the test set using the EffcientNetV2-L model for the 5-class classification of lung and colon cancers, outperforming the existing methods. Using gradCAM, we created visual saliency maps to precisely locate the vital regions in the histopathology images from the test set where the models put more attention during cancer subtype predictions. This visual saliency maps may potentially assist pathologists to design better treatment strategies. Therefore, it is possible to use the proposed pipeline in clinical settings for fully automated lung and colon cancer detection from histopathology images with explainability. |
format | Online Article Text |
id | pubmed-10178684 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-101786842023-05-13 An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer Tummala, Sudhakar Kadry, Seifedine Nadeem, Ahmed Rauf, Hafiz Tayyab Gul, Nadia Diagnostics (Basel) Article Lung and colon cancers are among the leading causes of human mortality and morbidity. Early diagnostic work up of these diseases include radiography, ultrasound, magnetic resonance imaging, and computed tomography. Certain blood tumor markers for carcinoma lung and colon also aid in the diagnosis. Despite the lab and diagnostic imaging, histopathology remains the gold standard, which provides cell-level images of tissue under examination. To read these images, a histopathologist spends a large amount of time. Furthermore, using conventional diagnostic methods involve high-end equipment as well. This leads to limited number of patients getting final diagnosis and early treatment. In addition, there are chances of inter-observer errors. In recent years, deep learning has shown promising results in the medical field. This has helped in early diagnosis and treatment according to severity of disease. With the help of EffcientNetV2 models that have been cross-validated and tested fivefold, we propose an automated method for detecting lung (lung adenocarcinoma, lung benign, and lung squamous cell carcinoma) and colon (colon adenocarcinoma and colon benign) cancer subtypes from LC25000 histopathology images. A state-of-the-art deep learning architecture based on the principles of compound scaling and progressive learning, EffcientNetV2 large, medium, and small models. An accuracy of 99.97%, AUC of 99.99%, F1-score of 99.97%, balanced accuracy of 99.97%, and Matthew’s correlation coefficient of 99.96% were obtained on the test set using the EffcientNetV2-L model for the 5-class classification of lung and colon cancers, outperforming the existing methods. Using gradCAM, we created visual saliency maps to precisely locate the vital regions in the histopathology images from the test set where the models put more attention during cancer subtype predictions. This visual saliency maps may potentially assist pathologists to design better treatment strategies. Therefore, it is possible to use the proposed pipeline in clinical settings for fully automated lung and colon cancer detection from histopathology images with explainability. MDPI 2023-04-29 /pmc/articles/PMC10178684/ /pubmed/37174985 http://dx.doi.org/10.3390/diagnostics13091594 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Tummala, Sudhakar Kadry, Seifedine Nadeem, Ahmed Rauf, Hafiz Tayyab Gul, Nadia An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title | An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title_full | An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title_fullStr | An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title_full_unstemmed | An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title_short | An Explainable Classification Method Based on Complex Scaling in Histopathology Images for Lung and Colon Cancer |
title_sort | explainable classification method based on complex scaling in histopathology images for lung and colon cancer |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10178684/ https://www.ncbi.nlm.nih.gov/pubmed/37174985 http://dx.doi.org/10.3390/diagnostics13091594 |
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